PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g021800.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 797aa MW: 91552.6 Da PI: 6.9607

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g021800.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.6	5.4e-20	60	134	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC+a ++v+++++gkw+++++++eHnHel Csa13g021800.1 60 EYYNGYAIRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 134 69************************************876..............589*************************98 PP
2	FAR1	67.6	3.1e-21	230	306	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCs+eg+++++ r+gC a +++k++++g w v++l+++HnH+l p Csa13g021800.1 230 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 306 6*************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-15	60	134	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.0E-16	230	306	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-25	408	499	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	682	718	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-7	690	715	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-8	693	720	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence Send to blast
MENVDTELNS FNNMVAKAYP VRVLHHNNNN NGVNEDEEGG SGGVEPYVGL EFDTAEEARE 60 YYNGYAIRTG FKVRTGQLYR SRTDGTVSSR RFVCSKEGFQ LNSRTGCTAF IRVQRRDTGK 120 WVLDQIQKEH NHELGGETQV EETTPRPSRA PAPTKLGVTV NPHRPKMKVV DESDREPRSC 180 PGGGFKRFKG GGSEGEVSDD HHHQMQQSKA VTGTEPYAGL EFGSANEACQ FYQAYAEVVG 240 FRVRIGQLFR SKVDGSITSR RFVCSREGFQ HPSRMGCGAY MRIKRQDSGG WIVDRLNKDH 300 NHDLEPGKKN DAGMKKITDD GTGGLDSVDL IELNDFGNNN NNHIKKTREN RIGEEWYPLL 360 LDYFQSRQTE DMGFFYAVEL DVSNGSCMSI FWADSRARFA CSQFGDTVVF DTSYRKGNYA 420 VPFATVIGFN HHRQPVLLGC AMVADESKEA FLWLFQTWLR AMSGRRPRSI VADQDLHIQQ 480 ALVQVFPGAH HRYSAWQVRE KEQENLRPFP SEFKYEYEKC IYQTQTTVEF DSVWSALINK 540 YGLRDDIWLR EIYEQRENWV PAYLRASFFA GIPINGTTES FFGASLDALT PLREFISRYE 600 QALEQRREEE RKEDFNSYNL QPFLQTKEPV EEQCRRLYTL TVFRIFQSEL VQSYNYLCLK 660 TYEEGAISRF LVRKCGNESE KHAVTFSASN LNSSCSCQMF EHEGLLCRHI LKVFNLLDIR 720 ELPSRYILHR WTKNAEFGFV RDMESGVSAQ DLKALMVWSL REAASKYIEF GTSSLEKYKL 780 AYEIMREGGK KLCWQR*

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence Send to blast

MENVDTELNS FNNMVAKAYP VRVLHHNNNN NGVNEDEEGG SGGVEPYVGL EFDTAEEARE  60
YYNGYAIRTG FKVRTGQLYR SRTDGTVSSR RFVCSKEGFQ LNSRTGCTAF IRVQRRDTGK  120
WVLDQIQKEH NHELGGETQV EETTPRPSRA PAPTKLGVTV NPHRPKMKVV DESDREPRSC  180
PGGGFKRFKG GGSEGEVSDD HHHQMQQSKA VTGTEPYAGL EFGSANEACQ FYQAYAEVVG  240
FRVRIGQLFR SKVDGSITSR RFVCSREGFQ HPSRMGCGAY MRIKRQDSGG WIVDRLNKDH  300
NHDLEPGKKN DAGMKKITDD GTGGLDSVDL IELNDFGNNN NNHIKKTREN RIGEEWYPLL  360
LDYFQSRQTE DMGFFYAVEL DVSNGSCMSI FWADSRARFA CSQFGDTVVF DTSYRKGNYA  420
VPFATVIGFN HHRQPVLLGC AMVADESKEA FLWLFQTWLR AMSGRRPRSI VADQDLHIQQ  480
ALVQVFPGAH HRYSAWQVRE KEQENLRPFP SEFKYEYEKC IYQTQTTVEF DSVWSALINK  540
YGLRDDIWLR EIYEQRENWV PAYLRASFFA GIPINGTTES FFGASLDALT PLREFISRYE  600
QALEQRREEE RKEDFNSYNL QPFLQTKEPV EEQCRRLYTL TVFRIFQSEL VQSYNYLCLK  660
TYEEGAISRF LVRKCGNESE KHAVTFSASN LNSSCSCQMF EHEGLLCRHI LKVFNLLDIR  720
ELPSRYILHR WTKNAEFGFV RDMESGVSAQ DLKALMVWSL REAASKYIEF GTSSLEKYKL  780
AYEIMREGGK KLCWQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g021800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC068655	0.0	AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010454146.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1
Swissprot	Q3E7I5	0.0	FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12
TrEMBL	R0FBV1	0.0	R0FBV1_9BRAS; Uncharacterized protein
STRING	XP_010454147.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	0.0	FAR1-related sequence 12

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]