PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa13g021800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 797aa MW: 91552.6 Da PI: 6.9607 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.6 | 5.4e-20 | 60 | 134 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC+a ++v+++++gkw+++++++eHnHel Csa13g021800.1 60 EYYNGYAIRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 134 69**************************************876..............589***************************98 PP | |||||||
2 | FAR1 | 67.6 | 3.1e-21 | 230 | 306 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY++YA+ vGF+vr+ + +sk +g+it+r+fvCs+eg+++++ r+gC a +++k++++g w v++l+++HnH+l p Csa13g021800.1 230 QFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEP 306 6***************************************9994..............799***************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-15 | 60 | 134 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.0E-16 | 230 | 306 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.0E-25 | 408 | 499 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.361 | 682 | 718 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-7 | 690 | 715 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.1E-8 | 693 | 720 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 797 aa Download sequence Send to blast |
MENVDTELNS FNNMVAKAYP VRVLHHNNNN NGVNEDEEGG SGGVEPYVGL EFDTAEEARE 60 YYNGYAIRTG FKVRTGQLYR SRTDGTVSSR RFVCSKEGFQ LNSRTGCTAF IRVQRRDTGK 120 WVLDQIQKEH NHELGGETQV EETTPRPSRA PAPTKLGVTV NPHRPKMKVV DESDREPRSC 180 PGGGFKRFKG GGSEGEVSDD HHHQMQQSKA VTGTEPYAGL EFGSANEACQ FYQAYAEVVG 240 FRVRIGQLFR SKVDGSITSR RFVCSREGFQ HPSRMGCGAY MRIKRQDSGG WIVDRLNKDH 300 NHDLEPGKKN DAGMKKITDD GTGGLDSVDL IELNDFGNNN NNHIKKTREN RIGEEWYPLL 360 LDYFQSRQTE DMGFFYAVEL DVSNGSCMSI FWADSRARFA CSQFGDTVVF DTSYRKGNYA 420 VPFATVIGFN HHRQPVLLGC AMVADESKEA FLWLFQTWLR AMSGRRPRSI VADQDLHIQQ 480 ALVQVFPGAH HRYSAWQVRE KEQENLRPFP SEFKYEYEKC IYQTQTTVEF DSVWSALINK 540 YGLRDDIWLR EIYEQRENWV PAYLRASFFA GIPINGTTES FFGASLDALT PLREFISRYE 600 QALEQRREEE RKEDFNSYNL QPFLQTKEPV EEQCRRLYTL TVFRIFQSEL VQSYNYLCLK 660 TYEEGAISRF LVRKCGNESE KHAVTFSASN LNSSCSCQMF EHEGLLCRHI LKVFNLLDIR 720 ELPSRYILHR WTKNAEFGFV RDMESGVSAQ DLKALMVWSL REAASKYIEF GTSSLEKYKL 780 AYEIMREGGK KLCWQR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa13g021800.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC068655 | 0.0 | AC068655.3 Genomic Sequence For Arabidopsis thaliana Clone F17K4 From Chromosome V, complete sequence. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010454146.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X1 | ||||
Swissprot | Q3E7I5 | 0.0 | FRS12_ARATH; Protein FAR1-RELATED SEQUENCE 12 | ||||
TrEMBL | R0FBV1 | 0.0 | R0FBV1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010454147.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5730 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18960.1 | 0.0 | FAR1-related sequence 12 |
Publications ? help Back to Top | |||
---|---|---|---|
|