PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 289aa MW: 33788.1 Da PI: 9.8379

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g020980.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.7	1.6e-16	19	110	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+l ++d +++ + +p++f+++ + ++ s ++l+ ++ sW++++ +++ + y+ +kGW +F ++n+L ++ ++F+++g+++f v Csa13g020980.1 19 FFKILRKEDLSSEIMRGIPRNFIKSTS-EEDLSANIVLKVSWRSSWTIRI--SRNLCFyYMEKKGWDKFLSDNDLGNNEYLTFTHKGHMCF--SV 108 99*******************8874.456999************..999999566669*******************999999..66 PP EE CS B3 95 kv 96 + Csa13g020980.1 109 DI 110 55 PP
2	B3	44.7	2.4e-14	204	284	15	99
-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l +pkkf + h+ k e+++ +++d e+ sW+v +++++++++ + +GW + +k+ gL gD+++Fkl++ +e++v+v r+ Csa13g020980.1 204 FLGIPKKFEKLHMPK--ETTMFKIYDpERETSWDVMYKFTNNKQSRF-CAGWIRLAKDLGLVIGDVCTFKLVK--PTEMLVTVTRR 284 478***8777644..5568999996777*****88888854.55******************976..77789998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.5E-17	13	112	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-17	14	117	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.72E-16	17	111	No hit	No description
PROSITE profile	PS50863	11.646	19	114	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-14	19	110	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-16	19	114	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.1E-16	189	284	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.464	190	285	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.59E-19	190	284	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.04E-15	191	283	No hit	No description
SMART	SM01019	2.4E-15	193	285	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.4E-11	204	284	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MVRKRMFGQV MEKGDNPAFF KILRKEDLSS EIMRGIPRNF IKSTSEEDLS ANIVLKVSWR 60 SSWTIRISRN LCFYYMEKKG WDKFLSDNDL GNNEYLTFTH KGHMCFSVDI YQIDGMELLR 120 PRKSAPTVAF SSVRNKRDQR ENMFEYPSSE SSYLGPKTAE STGRRQTEKS KKKKMKVEII 180 CDDSEDDTLV PEFTITIKKS YLIFLGIPKK FEKLHMPKET TMFKIYDPER ETSWDVMYKF 240 TNNKQSRFCA GWIRLAKDLG LVIGDVCTFK LVKPTEMLVT VTRREINL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g020980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010454030.1	0.0	PREDICTED: B3 domain-containing protein At5g18090-like
Swissprot	Q9FK61	1e-134	Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBL	R0FLU3	1e-134	R0FLU3_9BRAS; Uncharacterized protein
STRING	XP_010454030.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM565	21	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18090.1	1e-127	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]