PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g020630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WOX
Protein Properties Length: 261aa    MW: 28778.9 Da    PI: 6.7045
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g020630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox474.4e-151878257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    r+R+++++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  Csa13g020630.1 18 RSRWSPKPEQILILESIFNSgIVNPPKDETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 78
                    89*****************99*************************************997 PP
2Wus_type_Homeobox106.51.7e-341780265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+++Le++G+++d+NVfyWFQNr++R+r++q
     Csa13g020630.1 17 VRSRWSPKPEQILILESIFNSGIVNPPKDETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 80
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-141285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-81384IPR009057Homeodomain-like
PROSITE profilePS5007111.2241479IPR001356Homeobox domain
SMARTSM003892.7E-51683IPR001356Homeobox domain
PfamPF000468.8E-131878IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDQEGASQST STSTEPVRSR WSPKPEQILI LESIFNSGIV NPPKDETVRI RKMLEKFGAV  60
GDANVFYWFQ NRRSRSRRRQ RQLQAATAAP ATSGGDQHMT AMSMHQYPYS NSEIDLGFGS  120
CINSSANYFL NGTTSSSQVS SFLLGLSSSS GVCETNGMEN LFTMHGHESH HHHQHSSNAH  180
SMFSSSDENS NFQYQQGLMT VFINGVPTEV TKGTIDMKAT FGEDSVLLHS SGLPLPTDEF  240
GFLMHSLQHG QAYFLVPRQT *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g020630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2514030.0AY251403.1 Arabidopsis thaliana WOX12 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453983.10.0PREDICTED: WUSCHEL-related homeobox 12-like
SwissprotQ8GY251e-129WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBLD7LXM91e-138D7LXM9_ARALL; Predicted protein
STRINGXP_010453983.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28192768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.21e-114WUSCHEL related homeobox 12
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]