PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g020200.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 577aa    MW: 62958.7 Da    PI: 6.3791
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g020200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-11210266155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++  g++ k  + g ++ +e+Aa+a++ a++k++g
  Csa13g020200.1 210 SIYRGVTRHRWTGRYEAHLWDnSCKrEGQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 266
                     57*******************88885445536655.779999**************98 PP
2AP251.23.2e-16309360155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Csa13g020200.1 309 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 360
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.6E-9210266IPR001471AP2/ERF domain
CDDcd000188.61E-19210276No hitNo description
SuperFamilySSF541716.47E-15210276IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-12211275IPR001471AP2/ERF domain
PROSITE profilePS5103217.319211274IPR001471AP2/ERF domain
SMARTSM003806.2E-23211280IPR001471AP2/ERF domain
PRINTSPR003674.0E-6212223IPR001471AP2/ERF domain
PfamPF008474.0E-11309360IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17309369IPR016177DNA-binding domain
CDDcd000182.22E-24309368No hitNo description
Gene3DG3DSA:3.30.730.101.8E-17310368IPR001471AP2/ERF domain
PROSITE profilePS5103218.742310368IPR001471AP2/ERF domain
SMARTSM003809.7E-33310374IPR001471AP2/ERF domain
PRINTSPR003674.0E-6350370IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    Send to blast
MNSMNNWLGF SLSPHDQNHH HTDLDSSTTT TAVDVAGEYC FDLAAAASDG SSAVQTSFAS  60
PFGVVLEAFT RDNSSHSRDW DINSGACNNI HNNEPNGPKL ENFLGRTSTI YNTNENVGDG  120
SGGCGGDGGG GGSLGLSMIK TWLSSQPVAN VNHQDNGNGA RGLSLSMNSS TTCDSNKYNN  180
NNDVVQEKTL VDVVEATPKK TIESFGQRTS IYRGVTRHRW TGRYEAHLWD NSCKREGQTR  240
KGRQGGYDKE EKAARAYDLA ALKYWGTTTT TNFPMSSYEK EVEEMKHMTR QEYVASLRRK  300
SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FGTQEEAAEA YDIAAIKFRG  360
LSAVTNFDMN RYNVKAILES PSLPIGSSAK RLKEVNSPVP SMMISNNVSE SASNVGGWQN  420
AAFQHHQGMD LSVLQQQQER YVGYYNGGNL SSESTRVCSK QEEEQQPFLS NSIDHHSSTS  480
DDSVTICGNV VGYGGYQGFA IPVGTSVNCD AFTAAEIAYN ARNHYYYAQQ QQQQQIQQIP  540
EGDFPVAISN NVGSNMYFHG EGGGEGASMF TVWNGT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g020200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856840.0AY585684.1 Arabidopsis thaliana clone at5g17430 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453937.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
SwissprotQ6PQQ40.0BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLD7LX050.0D7LX05_ARALL; Predicted protein
STRINGXP_010453937.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.10.0AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]