PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g017080.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 293aa    MW: 32817.9 Da    PI: 8.2207
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g017080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57386.43.8e-27701501797
          DUF573  17 qGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +Gl+d++aktg + + d+dafy+f+ +si++kv+k+ql++Kir+LKkKf +++ ++++g +p+f++++d+++f++s++iWg
  Csa13g017080.1  70 KGLVDYRAKTGFQTKIDWDAFYRFIGGSIHVKVTKDQLSSKIRKLKKKFLDHMLDINEGIDPHFTRSSDSEAFGFSMMIWG 150
                     7*******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.9E-1970150IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MATPTQLDSS SPGVDGGYED DDDTSPLSRR KPQRKRSSKR AAASETLTVE EETKKKKRKK  60
VKNSNNNNNK GLVDYRAKTG FQTKIDWDAF YRFIGGSIHV KVTKDQLSSK IRKLKKKFLD  120
HMLDINEGID PHFTRSSDSE AFGFSMMIWG ENNAQLANAA SMDKPHHSET QEEMIKEGEE  180
VALIDNVAAK SDLVDKSKHE AIAVDKITTA ENGTAGKEND DDELCAVQDA FETLMSHGLS  240
DYQKKVRVKK LMSLDTEKRR ELSNEWKALC LEESKLSIKK LRFTAKLAEA AN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15358KKKKRK
25359KKKKRKK
35559KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May play redundant roles with GEBP and GPL1 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g017080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083809.11e-164PREDICTED: GLABROUS1 enhancer-binding protein-like 2
SwissprotP0DKL08e-93STKLT_ARATH; GLABROUS1 enhancer-binding protein-like 2
TrEMBLD7M6221e-102D7M622_ARALL; Predicted protein
STRINGXP_010456528.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14280.15e-89DNA-binding storekeeper protein-related