PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g017080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 293aa MW: 32817.9 Da PI: 8.2207 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 86.4 | 3.8e-27 | 70 | 150 | 17 | 97 |
DUF573 17 qGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +Gl+d++aktg + + d+dafy+f+ +si++kv+k+ql++Kir+LKkKf +++ ++++g +p+f++++d+++f++s++iWg Csa13g017080.1 70 KGLVDYRAKTGFQTKIDWDAFYRFIGGSIHVKVTKDQLSSKIRKLKKKFLDHMLDINEGIDPHFTRSSDSEAFGFSMMIWG 150 7*******************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.9E-19 | 70 | 150 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MATPTQLDSS SPGVDGGYED DDDTSPLSRR KPQRKRSSKR AAASETLTVE EETKKKKRKK 60 VKNSNNNNNK GLVDYRAKTG FQTKIDWDAF YRFIGGSIHV KVTKDQLSSK IRKLKKKFLD 120 HMLDINEGID PHFTRSSDSE AFGFSMMIWG ENNAQLANAA SMDKPHHSET QEEMIKEGEE 180 VALIDNVAAK SDLVDKSKHE AIAVDKITTA ENGTAGKEND DDELCAVQDA FETLMSHGLS 240 DYQKKVRVKK LMSLDTEKRR ELSNEWKALC LEESKLSIKK LRFTAKLAEA AN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 58 | KKKKRK |
2 | 53 | 59 | KKKKRKK |
3 | 55 | 59 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May play redundant roles with GEBP and GPL1 in cytokinin responses by regulating the transcript levels of type-A ARR response genes. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893, ECO:0000305|PubMed:18162594}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g017080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019083809.1 | 1e-164 | PREDICTED: GLABROUS1 enhancer-binding protein-like 2 | ||||
Swissprot | P0DKL0 | 8e-93 | STKLT_ARATH; GLABROUS1 enhancer-binding protein-like 2 | ||||
TrEMBL | D7M622 | 1e-102 | D7M622_ARALL; Predicted protein | ||||
STRING | XP_010456528.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14280.1 | 5e-89 | DNA-binding storekeeper protein-related |