 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa13g016910.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
C2H2 |
| Protein Properties |
Length: 267aa MW: 30191.2 Da PI: 9.216 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa13g016910.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.7 | 8.8e-05 | 99 | 121 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+++++++ +L Hi+ H
Csa13g016910.1 99 SCSVCSRVYPTSRLLSIHISEaH 121
6******************9888 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
AMAMGMAVDT VGELAFPVWN PIRRRFPPDS PFFASGNVER ELLAKQVALD LTEDEINHLQ 60
IIVETESSRR ISCPIAGCPE RLKSLDHFED HYNARHTASC SVCSRVYPTS RLLSIHISEA 120
HDSFFQAKVA RGYDMYECLV EGCGLKFKTY KARHRHLVDK HKFPTTFEFF KRTQLSKKRR 180
EKLQRQHVSK LKHKEDKEEA SSDAKEVEDK ASVDGLVSAL STLTTADTTP SNVSFGRRHG 240
RGLTFVPRSV HREKRTEYSS APGPTN*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB493748 | 0.0 | AB493748.1 Arabidopsis thaliana At5g14140 mRNA for hypothetical protein, partial cds, clone: RAAt5g14140. |
| GenBank | AK228356 | 0.0 | AK228356.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-77-M10. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G14140.1 | 1e-176 | zinc ion binding;nucleic acid binding;zinc ion binding |
