PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g014310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB

Protein Properties

Length: 924aa MW: 103455 Da PI: 5.1193

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g014310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.9	2e-12	10	49	8	48
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 de l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l Csa13g014310.1 10 QDEVLRKAVHSFKGKNWKKIAEYFK-DRTDVQCLHRWQKVL 49 6999******************9.**********986 PP
2	Myb_DNA-binding	64.3	2.3e-20	55	101	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde +v++++++G++ W+tIar+++ gR +kqc++rw+++l Csa13g014310.1 55 KGPWTKEEDEMIVQLIEKYGPKKWSTIARYLP-GRIGKQCRERWHNHL 101 79****************************.***********97 PP
3	Myb_DNA-binding	42.7	1.3e-13	107	149	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gR+++ +k++w+ Csa13g014310.1 107 KEAWTQEEELVLIRAHQIYGNK-WAELTKFLP-GRSDNGIKNHWH 149 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.911	1	49	IPR017930	Myb domain
SMART	SM00717	2.5E-6	2	51	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.38E-11	8	59	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-20	9	65	IPR009057	Homeodomain-like
CDD	cd00167	6.03E-9	11	49	No hit	No description
Pfam	PF00249	4.1E-10	11	49	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	33.057	50	105	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-31	52	148	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-19	54	103	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-18	55	101	IPR001005	SANT/Myb domain
CDD	cd00167	2.34E-17	57	101	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-27	66	108	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.044	106	156	IPR017930	Myb domain
SMART	SM00717	4.4E-12	106	154	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-11	107	149	IPR001005	SANT/Myb domain
CDD	cd00167	1.88E-9	109	149	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-20	109	156	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence Send to blast
LSFSNQTYVQ DEVLRKAVHS FKGKNWKKIA EYFKDRTDVQ CLHRWQKVLN PELVKGPWTK 60 EEDEMIVQLI EKYGPKKWST IARYLPGRIG KQCRERWHNH LNPAINKEAW TQEEELVLIR 120 AHQIYGNKWA ELTKFLPGRS DNGIKNHWHS SVKKKLDSYM SSGLLDQYQA MPLAPYERSS 180 TLQSAFMQSN IDGNGEIDSR QNSNMVGCSL SARDFPDGAI NMNHHFYPCG NSQETEQAVY 240 HSDQYFYPEL EDISVSISEV SYDMEDCSQF PDHNNVSTSP SQDYQFDFQE LSDISLEMRQ 300 TNMSELPMPY TKESKESTVE PTNSTLSIDV ATYNNSANVL TPETECCRVL FPDQEREGDS 360 VSRSLTQEPN EVNQSDSRDP ILSASASDSQ ISEATKSPMQ SSSSRLNATA ASGKETLRPA 420 PLIITPDKYA KKSSGLICHP FEAEPKCTTN GNGRFVCIDD PSSSTCVDGG TNNSSEEDQS 480 YHVNDSKKLV AVSDFASLAE DRPHSPPKHD PNTTSEQHHE DMGASSSLGF PSLDLPVFSC 540 DLLQSKNDPL HDYSPLGIRK LLMSTMTCIS PIRLWGSPTG KKTLAGAKSI LRKRTRDLLT 600 PLSEKRSDKK LETNIAASLA KDFSRLDVMF DESENRESIF GNNTDVILGD RVNGGEGEEN 660 WRSNPSSLFS HKMPEETMHI RKSLEKAEQT CMEANVREKD GSEANVENAE SFSGVLSEHN 720 NCKPVLSSPP GQSVTKAEKA QVLTPRNQFQ KTFMATSNKE QHSSSSLCLV INSPSRARNT 780 EGHLVDNETS NENFSIFCGT PFRRGLESPS AWKSPFYVNS LLPSPRFDTE ITIEDMGYIF 840 SPGERNYESI GVMTQRNEHA SAFADAMEVS LSPTNVDADQ KKELNKENNN PLLAERRVLD 900 FNDCESPVKA TEEVSSYLLK GCR*

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence Send to blast

LSFSNQTYVQ DEVLRKAVHS FKGKNWKKIA EYFKDRTDVQ CLHRWQKVLN PELVKGPWTK  60
EEDEMIVQLI EKYGPKKWST IARYLPGRIG KQCRERWHNH LNPAINKEAW TQEEELVLIR  120
AHQIYGNKWA ELTKFLPGRS DNGIKNHWHS SVKKKLDSYM SSGLLDQYQA MPLAPYERSS  180
TLQSAFMQSN IDGNGEIDSR QNSNMVGCSL SARDFPDGAI NMNHHFYPCG NSQETEQAVY  240
HSDQYFYPEL EDISVSISEV SYDMEDCSQF PDHNNVSTSP SQDYQFDFQE LSDISLEMRQ  300
TNMSELPMPY TKESKESTVE PTNSTLSIDV ATYNNSANVL TPETECCRVL FPDQEREGDS  360
VSRSLTQEPN EVNQSDSRDP ILSASASDSQ ISEATKSPMQ SSSSRLNATA ASGKETLRPA  420
PLIITPDKYA KKSSGLICHP FEAEPKCTTN GNGRFVCIDD PSSSTCVDGG TNNSSEEDQS  480
YHVNDSKKLV AVSDFASLAE DRPHSPPKHD PNTTSEQHHE DMGASSSLGF PSLDLPVFSC  540
DLLQSKNDPL HDYSPLGIRK LLMSTMTCIS PIRLWGSPTG KKTLAGAKSI LRKRTRDLLT  600
PLSEKRSDKK LETNIAASLA KDFSRLDVMF DESENRESIF GNNTDVILGD RVNGGEGEEN  660
WRSNPSSLFS HKMPEETMHI RKSLEKAEQT CMEANVREKD GSEANVENAE SFSGVLSEHN  720
NCKPVLSSPP GQSVTKAEKA QVLTPRNQFQ KTFMATSNKE QHSSSSLCLV INSPSRARNT  780
EGHLVDNETS NENFSIFCGT PFRRGLESPS AWKSPFYVNS LLPSPRFDTE ITIEDMGYIF  840
SPGERNYESI GVMTQRNEHA SAFADAMEVS LSPTNVDADQ KKELNKENNN PLLAERRVLD  900
FNDCESPVKA TEEVSSYLLK GCR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	4e-65	7	156	10	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-65	7	156	10	159	MYB PROTO-ONCOGENE PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669, PubMed:25806785). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269\|PubMed:17287251, ECO:0000269\|PubMed:21862669, ECO:0000269\|PubMed:25806785}.; FUNCTION: Involved in transcription regulation during induced endoreduplication at the powdery mildew (e.g. G.orontii) infection site, thus promoting G.orontii growth and reproduction. {ECO:0000269\|PubMed:20018666}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g014310.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid (SA) (PubMed:16463103). Expressed in a cell cycle-dependent manner, with highest levels 2 hours before the peak of mitotic index in cells synchronized by aphidicolin. Activated by CYCB1 (PubMed:17287251). Accumulates at powdery mildew (e.g. G.orontii) infected cells. {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:17287251}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF371975	0.0	AF371975.2 Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4 (MYB3R4) mRNA, complete cds.
GenBank	AY519650	0.0	AY519650.1 Arabidopsis thaliana MYB transcription factor (At5g11510) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019090010.1	0.0	PREDICTED: myb-related protein 3R-1-like, partial
Swissprot	Q94FL9	0.0	MB3R4_ARATH; Transcription factor MYB3R-4
TrEMBL	R0H5A0	0.0	R0H5A0_9BRAS; Uncharacterized protein
STRING	XP_010456490.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13213	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	0.0	myb domain protein 3r-4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Saito T, et al. Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana. Plant Signal Behav, 2015. 10(3): p. e990817 [PMID:25806785] Kobayashi K, et al. Transcriptional repression by MYB3R proteins regulates plant organ growth. EMBO J., 2015. 34(15): p. 1992-2007 [PMID:26069325] Chen P, et al. Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage. Nat Commun, 2017. 8(1): p. 635 [PMID:28935922]