PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g013830.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 437aa MW: 49150.1 Da PI: 8.6959 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.4e-18 | 114 | 160 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+++vkq+G + W+ I++++ gR +kqc++rw+++l Csa13g013830.2 114 KGQWTAEEDRKLIKLVKQHGDRKWAIISEKFE-GRAGKQCRERWHNHL 160 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.9e-17 | 166 | 208 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ +v+a+++ G++ W+ Ia+ ++ gRt++++k++w+ Csa13g013830.2 166 KDSWSEEEERVFVEAHTRIGNK-WAEIAKLIQ-GRTENSIKNHWN 208 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.954 | 109 | 164 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.65E-28 | 111 | 207 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-16 | 113 | 162 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-26 | 115 | 167 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.5E-19 | 117 | 174 | No hit | No description |
CDD | cd00167 | 1.26E-14 | 117 | 160 | No hit | No description |
SMART | SM00717 | 1.2E-13 | 165 | 213 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.914 | 165 | 215 | IPR017930 | Myb domain |
CDD | cd00167 | 5.50E-10 | 168 | 211 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-19 | 168 | 213 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MEDQRIQEKS LAHCAAPPLT AVERFLNSQK SGTLCFKTQE RSIDRPILKT ARAIETRKDN 60 KENMMMFGPR KGKNLAVNSG NRNVIGEMIV KGATTRDYQK STTCKKRPYK NLIKGQWTAE 120 EDRKLIKLVK QHGDRKWAII SEKFEGRAGK QCRERWHNHL RPDIKKDSWS EEEERVFVEA 180 HTRIGNKWAE IAKLIQGRTE NSIKNHWNAT KRRQNSKRKH KRSRNVDSNS SDIDDLSPSA 240 KRPCILEDYI KSIENNDKDN GVNIITTGGK NVLSTSNLDD GDSTSSLLDD PYDEELVFLR 300 NIFANHPVSL EHMDLSQGSD EITQSSSSGF MFKNPNPKPS LHNNIVGNQL GTMVIAEPAI 360 TSHLASDIYL SDLLDGSASS SSLSFMSTNN SEHAAENELF VPQANSTGER REMDLIEMLS 420 GSSTTGGTNN IWFPLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-44 | 112 | 214 | 2 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 8e-44 | 112 | 214 | 56 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-44 | 112 | 214 | 56 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-44 | 112 | 214 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-44 | 112 | 214 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 221 | KRRQNSKRKHKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g013830.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519620 | 0.0 | AY519620.1 Arabidopsis thaliana MYB transcription factor (At5g11050) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010453145.1 | 0.0 | PREDICTED: myb-related protein 330-like | ||||
Swissprot | Q9FY60 | 0.0 | MYB64_ARATH; Transcription factor MYB64 | ||||
TrEMBL | R0FKF0 | 0.0 | R0FKF0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010453145.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11050.1 | 0.0 | myb domain protein 64 |
Publications ? help Back to Top | |||
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