PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g012280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 618aa MW: 69033.8 Da PI: 6.7279 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.5 | 1e-15 | 407 | 458 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Csa13g012280.1 407 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 458 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.40E-14 | 281 | 374 | No hit | No description |
SMART | SM00380 | 6.1E-12 | 282 | 378 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.103 | 282 | 372 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-5 | 345 | 372 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-5 | 345 | 373 | IPR016177 | DNA-binding domain |
SuperFamily | SSF54171 | 1.18E-17 | 407 | 467 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.4E-10 | 407 | 458 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.27E-11 | 407 | 466 | No hit | No description |
SMART | SM00380 | 7.9E-31 | 408 | 472 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.9E-18 | 408 | 466 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 408 | 466 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKDE 60 AQLAVAASMA DSTILTTFVD PQSHSQSHIP KLEDFLGDSS SMVRYSDNSQ TETQDSSLTQ 120 IYDPRHHQNH HHNQTGFYSD HHDFKTMAGF QTAFSTNSGS EVDDSASIGR THLAGEYLGH 180 VVESSSGPDL GFHGGSNNTT NTGGALSLGV NVNNSTNQHR NDNEITNHHY RGGGERNNNN 240 NNNNNENNEK TESEKEKPIV AVETSDCSNK KIADTFGQRT SIYRGVTRHR WTGRYEAHLW 300 DNSCRREGQA RKGRQELWLS LVLSFCMCYS IWGCILALLC INSGYDKEDK AARAYDLAAL 360 KYWNATATTN FPITNYSKEL EDMKHMTKQE FIASLRRKSS GFSRGASIYR GVTRHHQQGR 420 WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAAIKFRGIN AVTNFEMNRY DVEAIMKSAL 480 PIGGAAKRLK LSLEAASSEQ KPILGHQLHH FQQQQQQQQQ LQLQSSPNHS SINFALCPNP 540 AVQSQQIIPC GIPFEAAALY HHQQQQQQQQ QNFFQHFPAN AASDSTGSNN NSNVQGSMGL 600 MAPNPAEFFL WPNNQSY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g012280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY974197 | 0.0 | AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010453080.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | D7M2X9 | 0.0 | D7M2X9_ARALL; Uncharacterized protein | ||||
STRING | XP_010453080.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3333 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.3 | 0.0 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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