PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g012280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 618aa    MW: 69033.8 Da    PI: 6.7279
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g012280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-15407458155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Csa13g012280.1 407 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 458
                     57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.40E-14281374No hitNo description
SMARTSM003806.1E-12282378IPR001471AP2/ERF domain
PROSITE profilePS5103213.103282372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-5345372IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-5345373IPR016177DNA-binding domain
SuperFamilySSF541711.18E-17407467IPR016177DNA-binding domain
PfamPF008474.4E-10407458IPR001471AP2/ERF domain
CDDcd000183.27E-11407466No hitNo description
SMARTSM003807.9E-31408472IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-18408466IPR001471AP2/ERF domain
PROSITE profilePS5103219.111408466IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKDE  60
AQLAVAASMA DSTILTTFVD PQSHSQSHIP KLEDFLGDSS SMVRYSDNSQ TETQDSSLTQ  120
IYDPRHHQNH HHNQTGFYSD HHDFKTMAGF QTAFSTNSGS EVDDSASIGR THLAGEYLGH  180
VVESSSGPDL GFHGGSNNTT NTGGALSLGV NVNNSTNQHR NDNEITNHHY RGGGERNNNN  240
NNNNNENNEK TESEKEKPIV AVETSDCSNK KIADTFGQRT SIYRGVTRHR WTGRYEAHLW  300
DNSCRREGQA RKGRQELWLS LVLSFCMCYS IWGCILALLC INSGYDKEDK AARAYDLAAL  360
KYWNATATTN FPITNYSKEL EDMKHMTKQE FIASLRRKSS GFSRGASIYR GVTRHHQQGR  420
WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAAIKFRGIN AVTNFEMNRY DVEAIMKSAL  480
PIGGAAKRLK LSLEAASSEQ KPILGHQLHH FQQQQQQQQQ LQLQSSPNHS SINFALCPNP  540
AVQSQQIIPC GIPFEAAALY HHQQQQQQQQ QNFFQHFPAN AASDSTGSNN NSNVQGSMGL  600
MAPNPAEFFL WPNNQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g012280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9741970.0AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453080.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLD7M2X90.0D7M2X9_ARALL; Uncharacterized protein
STRINGXP_010453080.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.30.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]