PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g011870.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

EIL

Protein Properties

Length: 268aa MW: 31202.8 Da PI: 4.1881

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g011870.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	90.4	4e-28	32	106	1	81
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekg 81 ++lk+rmwkd++l+++lk++k+++ ++ ++ + ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pek+ Csa13g011870.1 32 DDLKRRMWKDRNLMEKLKQQKRHNN---DV-VSLT--THRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKD 106 79******************964...44.4443..4899************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	7.7E-27	32	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MVEVEELEAL SPDEEEEEEE EEEEEEEEIS YDDLKRRMWK DRNLMEKLKQ QKRHNNDVVS 60 LTTHRAEASR RKKMARSQDS VLKYMMKIME VCKAKGFVYG IVPEKDLKIS DDQDQESSGS 120 KRKGEFVEPS KSVYTCQNSS CPKSDVSFGF GDKNSRTGHE IQCLYGPSQA PSIVTNTTSE 180 DDYSESSSAM DKRSDDDHSN DVNWMDYFWL ERMQNELHCS RRFEDDDDQS DNVNQFTESD 240 QSDNVNQSTF SVWDMVCEDK DIYSFDY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g011870.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC155342	2e-90	AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence.
GenBank	FJ543377	2e-90	FJ543377.1 Arabis alpina BAC clone PEP1_BAC, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010453034.1	1e-108	PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
Swissprot	Q9LX16	1e-79	EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBL	A0A3N6QTY9	1e-125	A0A3N6QTY9_BRACR; Uncharacterized protein
STRING	XP_010453034.1	1e-107	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16143	4	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10120.1	1e-74	EIL family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS Seed-specific expression of seven Arabidopsis promoters. Gene, 2014. 553(1): p. 17-23 [PMID:25261846]