PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13g011870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | EIL | ||||||||
Protein Properties | Length: 268aa MW: 31202.8 Da PI: 4.1881 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 90.4 | 4e-28 | 32 | 106 | 1 | 81 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekg 81 ++lk+rmwkd++l+++lk++k+++ ++ ++ + ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pek+ Csa13g011870.1 32 DDLKRRMWKDRNLMEKLKQQKRHNN---DV-VSLT--THRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKD 106 79********************964...44.4443..4899**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 7.7E-27 | 32 | 115 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MVEVEELEAL SPDEEEEEEE EEEEEEEEIS YDDLKRRMWK DRNLMEKLKQ QKRHNNDVVS 60 LTTHRAEASR RKKMARSQDS VLKYMMKIME VCKAKGFVYG IVPEKDLKIS DDQDQESSGS 120 KRKGEFVEPS KSVYTCQNSS CPKSDVSFGF GDKNSRTGHE IQCLYGPSQA PSIVTNTTSE 180 DDYSESSSAM DKRSDDDHSN DVNWMDYFWL ERMQNELHCS RRFEDDDDQS DNVNQFTESD 240 QSDNVNQSTF SVWDMVCEDK DIYSFDY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13g011870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155342 | 2e-90 | AC155342.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH052O08, complete sequence. | |||
GenBank | FJ543377 | 2e-90 | FJ543377.1 Arabis alpina BAC clone PEP1_BAC, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010453034.1 | 1e-108 | PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein | ||||
Swissprot | Q9LX16 | 1e-79 | EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein | ||||
TrEMBL | A0A3N6QTY9 | 1e-125 | A0A3N6QTY9_BRACR; Uncharacterized protein | ||||
STRING | XP_010453034.1 | 1e-107 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16143 | 4 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10120.1 | 1e-74 | EIL family protein |
Publications ? help Back to Top | |||
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