PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa13g011780.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 365aa MW: 41674.2 Da PI: 7.1893

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g011780.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.3	1.2e-11	78	110	3	35
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 ++k +rr+++NReAAr+sR+RKka++++Le+ Csa13g011780.1 78 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSR 110 6899*************************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.5E-7	76	120	No hit	No description
SMART	SM00338	2.3E-5	76	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.634	78	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.3E-9	78	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.25E-7	80	114	No hit	No description
PROSITE pattern	PS00036	0	83	98	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.1E-30	166	241	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MNTTSTHFVP QRRFEIYEPL NQISMWEESF KNNGGMYTPG SIIIPANEKT DSLSEDTSHG 60 AEGTPHKYDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK AYVQQLETSR LKLIHLEQEL 120 DRARQQGFYV GNGVESSALG FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD 180 IELRSLVENA MKHYFQLFRM KSTAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL 240 LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPEMTC 300 AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAAKQ 360 REPT*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MNTTSTHFVP QRRFEIYEPL NQISMWEESF KNNGGMYTPG SIIIPANEKT DSLSEDTSHG  60
AEGTPHKYDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK AYVQQLETSR LKLIHLEQEL  120
DRARQQGFYV GNGVESSALG FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGQVSD  180
IELRSLVENA MKHYFQLFRM KSTAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL  240
LPHFDPLTDQ QLLDVCNLRQ SCQQAEDALS QGMEKLQHTL AESVAAGKLG EGSYIPEMTC  300
AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAAKQ  360
REPT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g011780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK229351	0.0	AK229351.1 Arabidopsis thaliana mRNA for bZip transcription factor OBF4 / AtbZip57, complete cds, clone: RAFL16-60-A10.
GenBank	BT024896	0.0	BT024896.1 Arabidopsis thaliana At5g10030 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010453021.1	0.0	PREDICTED: transcription factor TGA4
Swissprot	Q39162	0.0	TGA4_ARATH; Transcription factor TGA4
TrEMBL	Q24JJ3	0.0	Q24JJ3_ARATH; At5g10030
STRING	XP_010453021.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	0.0	TGACG motif-binding factor 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. Plant J., 2017. 92(2): p. 305-316 [PMID:28771873]