PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g011450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 300aa    MW: 34293.5 Da    PI: 10.4495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g011450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.8e-1819109193
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffkvl + d +++++  +p +fa+ +  ++    t+++  ++g +Wev++  +k+s+  ++ ++GW++Fv++n L  ++f+ F++++++ f+ +
  Csa13g011450.1  19 FFKVLNSIDISSENMRAIPHDFARCFPDDE-LLGTMKISVPWGSTWEVRI--SKNSRFyFMEKSGWEKFVRDNALGRNEFLCFTHKEEMHFSVN 109
                     99*********************7776665.555****************..9***99555569********************9887888443 PP
2B339.59.9e-132202891587
                     -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      l lp++ a++++ +  +s ++++ +++g +sW+v +    +++++++++GW++ +k+  +  gD++ F+l++ 
  Csa13g011450.1 220 SLALPRSAANNYM-PRVKS-MVKIHHPDGkKSWRVVY--LVTRRGHLFSGGWRGLCKEYPIAFGDTCKFTLIKP 289
                     4789*****8885.33344.8*******999******..999999*************************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-1914113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1815119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-1718110No hitNo description
PROSITE profilePS5086312.71719114IPR003340B3 DNA binding domain
PfamPF023621.4E-1619109IPR003340B3 DNA binding domain
SMARTSM010193.7E-1719114IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-17202296IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.996206299IPR003340B3 DNA binding domain
CDDcd100175.42E-8209288No hitNo description
SMARTSM010194.6E-14209299IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-13219296IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-10220289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSRNPEFVRC YEERKQESFF KVLNSIDISS ENMRAIPHDF ARCFPDDELL GTMKISVPWG  60
STWEVRISKN SRFYFMEKSG WEKFVRDNAL GRNEFLCFTH KEEMHFSVNI MMQTGKEMVQ  120
PPKTRYFLAS SSRVKTEQDF KTEEVVVSSE LSSRVPRTAA ASSGGGMHKR KLNFGEKKAE  180
KSHNIKRTER GFSIRRDHAG ASSSSVAGFN IVISKTYLIS LALPRSAANN YMPRVKSMVK  240
IHHPDGKKSW RVVYLVTRRG HLFSGGWRGL CKEYPIAFGD TCKFTLIKPL ELLLVVTKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g011450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545978e-90AC254597.1 Capsella rubella clone CAP08-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452977.10.0PREDICTED: B3 domain-containing protein REM23-like
SwissprotQ9LXE11e-130REM23_ARATH; B3 domain-containing protein REM23
TrEMBLR0FG331e-162R0FG33_9BRAS; Uncharacterized protein
STRINGXP_010452977.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09780.11e-126B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]