PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g011010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 400aa    MW: 44486.6 Da    PI: 4.5949
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g011010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.96e-4761341129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtd elv +yLk+k+ gkkl + ++i+evdiyk+eP dLp +  +k+++ +w+fF++r+kkya+g r+nrat+ gyWk+tgk+++vl
  Csa13g011010.1   6 LAPGFRFHPTDVELVRYYLKRKILGKKLIV-DAIAEVDIYKFEPPDLPdMsYIKGGDLKWHFFCPREKKYASGVRANRATDCGYWKTTGKERPVL 99 
                     579************************988.89**************96347777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     + ++e+vg  ktL+++ g++p+ge+tdWvmheyrle
  Csa13g011010.1 100 C-NSEVVGKIKTLIYHFGKSPRGERTDWVMHEYRLE 134
                     *.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-573156IPR003441NAC domain
PROSITE profilePS5100552.5636156IPR003441NAC domain
PfamPF023656.4E-258133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGKTKLAPGF RFHPTDVELV RYYLKRKILG KKLIVDAIAE VDIYKFEPPD LPDMSYIKGG  60
DLKWHFFCPR EKKYASGVRA NRATDCGYWK TTGKERPVLC NSEVVGKIKT LIYHFGKSPR  120
GERTDWVMHE YRLEDKALAQ MNVPQDTYVV CVLFKKDGPG PRNGAQYGAP FRDEDWSDEE  180
ERTDVPTTSN PTIFHEPSRE TSLAVTVADD LNKDCFGGMI SESCVSDFLP TTTNTTSKLP  240
DPSDAANTHM SVTPLADTLP TPNNNNDDLY AMLDLFDDDE EFLGFPNEAI HNPGVSAPVS  300
LEDIFNGLPD LGNMHNNMPR ASSYDLIENS ELYLELQDLT APLLPPPLTA PLNPQTGNVN  360
DSRSSYLYNQ GHFDFSGGND DGPYGFSANI GHGPDSEKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-42615615168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g011010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3172170.0AK317217.1 Arabidopsis thaliana AT5G09330 mRNA, complete cds, clone: RAFL22-35-P15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452910.10.0PREDICTED: NAC domain-containing protein 82
RefseqXP_010452911.10.0PREDICTED: NAC domain-containing protein 82
SwissprotQ9FY820.0NAC82_ARATH; NAC domain-containing protein 82
TrEMBLR0HAY90.0R0HAY9_9BRAS; Uncharacterized protein
STRINGXP_010452909.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.40.0NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]