PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g007800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 274aa    MW: 31057.9 Da    PI: 8.2052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g007800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.8e-083075346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a + +  +   +W ++a +++ g+t  ++   + k
   Csa13g007800.1 30 SWTKEENKKFERALAVYADDtpdRWFKVADMIP-GKTISDVMRQYSK 75
                     7*****************99*************.******9998877 PP
2Myb_DNA-binding409.2e-13132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
   Csa13g007800.1 132 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKY 176
                      8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.5042679IPR017884SANT domain
SMARTSM007179.7E-82779IPR001005SANT/Myb domain
SuperFamilySSF466896.68E-112983IPR009057Homeodomain-like
CDDcd001671.54E-73076No hitNo description
PfamPF002491.2E-63075IPR001005SANT/Myb domain
PROSITE profilePS5129418.07125181IPR017930Myb domain
SuperFamilySSF466899.33E-16127180IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-10129178IPR009057Homeodomain-like
SMARTSM007179.9E-11129179IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.4E-16129180IPR006447Myb domain, plants
CDDcd001677.01E-10132176No hitNo description
PfamPF002493.9E-10132176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
METLHPLISH VPTSDHRFVV QEMMCLQSSS WTKEENKKFE RALAVYADDT PDRWFKVADM  60
IPGKTISDVM RQYSKLEEDL FDIEAGLVPI PGYRSAPCGF YDQLASQRDF DAYRKLPNGA  120
RGFDQDRRKG VPWTEEEHRR FLLGLLKYGK GDWRNISRNF VGSKTPTQVA SHAQKYYQRQ  180
VSGAKDKRRP SIHDITTVNL LNANLSRPSS DQGCFVSQQA EPKQGFTHRD SAEERVMFLG  240
QNLSSVMSPC DPTTIKFAGA DVYCDGGYTI TRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1631951175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g007800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195310.0AY519531.1 Arabidopsis thaliana MYB transcription factor (At5g05790) mRNA, complete cds.
GenBankBT0260540.0BT026054.1 Arabidopsis thaliana At5g05790 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452485.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-71DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLR0H8S80.0R0H8S8_9BRAS; Uncharacterized protein
STRINGXP_010452485.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.10.0MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]