PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g007510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 254aa    MW: 29045.6 Da    PI: 6.2764
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g007510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.52.9e-1226108286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W+++ + +L+ea  ++  +l  g+l++++W++v++++     +    ++ +qCk++++ l+k+yk +k+  +       st+++fd+l+
  Csa13g007510.1  26 WSEEATATLVEAWGNRYVKLHHGNLRQNDWKDVADAVnsrhGDNARAKTDVQCKNRIDTLKKKYKTEKAKLSP------STWRFFDRLD 108
                     *************************************86444444567999*****************99986......68*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2324109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
METTTTTPQS KSSGSHRPPL GREDWWSEEA TATLVEAWGN RYVKLHHGNL RQNDWKDVAD  60
AVNSRHGDNA RAKTDVQCKN RIDTLKKKYK TEKAKLSPST WRFFDRLDFL IGPVVKKSTR  120
GGVVVKSVVP VVNPSHLTPA GSESSLDDDD DDDDDDESND WEFVARKHPR VEEVDLSEEG  180
STCRELATAI LRFGEVYERI EGKKQQMMIE LEKQRMEVTK EVELKRLNML MEMQLEIEKS  240
KQRKRRVGSG MEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g007510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452457.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG87e-31ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLR0FGL51e-136R0FGL5_9BRAS; Uncharacterized protein
STRINGXP_010452460.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49262141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-126sequence-specific DNA binding transcription factors