PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g002750.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 316aa    MW: 34504.7 Da    PI: 5.7995
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g002750.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.9e-1256100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E++++++a +++  + Wk+I   +g  +t  q++s+ qky
   Csa13g002750.1  56 RESWTEGEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 100
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.24E-1650106IPR009057Homeodomain-like
PROSITE profilePS5129414.94251105IPR017930Myb domain
TIGRFAMsTIGR015572.6E-1854103IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.2E-654106IPR009057Homeodomain-like
SMARTSM007177.6E-1055103IPR001005SANT/Myb domain
PfamPF002493.4E-1056100IPR001005SANT/Myb domain
CDDcd001671.57E-758101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTSTNPVVGE ALPSETITDA TAEMTTTTVS SSSLSTEAGE APEKKVRKAY TITKSRESWT  60
EGEHDKFLEA LQLFDRDWKK IEDFVGSKTV IQIRSHAQKY FLKVQKNGTL AHVPPPRPKR  120
KAAHPYPQKA SKNAQMSLHV SMTFPPQINN LPGYTSWDND TSALLNIAVS GVTPPEDELD  180
AFCGPEGMHS HLYSISVVCF VVVGSNGIQN ESSPSASGIG SSSRTLSDSQ DLRLAKPAPS  240
MHGLPDFAEV YNFIGSVFDP DSKGRMKKLK EMDPINFETV LLLMRNLTVN LSNPDFEPSS  300
EHVDAAEEGP EHLRS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250, ECO:0000269|PubMed:17363273}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00484DAPTransfer from AT5G02840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g002750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ9372090.0AJ937209.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like1 (lcl1 gene).
GenBankAK3170120.0AK317012.1 Arabidopsis thaliana AT5G02840 mRNA, complete cds, clone: RAFL16-09-C03.
GenBankAY0428940.0AY042894.1 Arabidopsis thaliana putative protein (F9G14_150) mRNA, complete cds.
GenBankAY0815220.0AY081522.1 Arabidopsis thaliana putative protein (At5g02840) mRNA, complete cds.
GenBankAY5195140.0AY519514.1 Arabidopsis thaliana MYB transcription factor (At5g02840) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452132.10.0PREDICTED: protein REVEILLE 4-like isoform X1
RefseqXP_010452133.10.0PREDICTED: protein REVEILLE 4-like isoform X1
RefseqXP_010452137.10.0PREDICTED: protein REVEILLE 4-like isoform X1
SwissprotQ6R0G40.0RVE4_ARATH; Protein REVEILLE 4
TrEMBLQ9LZ010.0Q9LZ01_ARATH; Uncharacterized protein F9G14_150
STRINGXP_010452132.10.0(Camelina sativa)
STRINGXP_010452137.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152131118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02840.21e-148LHY/CCA1-like 1
Publications ? help Back to Top
  1. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]