PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g002170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 636aa    MW: 71627.8 Da    PI: 8.2819
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g002170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.2e-0875101127
                      TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktI 27 
                      +g WT+eEde l  av ++ g++Wk+I
   Csa13g002170.1  75 KGGWTPEEDETLRLAVDKYKGKRWKKI 101
                      688***********************9 PP
2Myb_DNA-binding60.43.7e-19184230148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
   Csa13g002170.1 184 KGPWTKEEDDKIVELVNKYGPAKWSVIAKSLP-GRIGKQCRERWHNHL 230
                      79******************************.*************97 PP
3Myb_DNA-binding51.81.9e-16236279146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+  l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   Csa13g002170.1 236 KDAWTVEEESALMNAHRVYGNK-WAEIAKVLP-GRTDNAIKNHWNS 279
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.9770114IPR017930Myb domain
SuperFamilySSF466892.66E-671107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-1372105IPR009057Homeodomain-like
SMARTSM007170.008874180IPR001005SANT/Myb domain
PfamPF002491.1E-575101IPR001005SANT/Myb domain
CDDcd001672.35E-478101No hitNo description
Gene3DG3DSA:1.10.10.606.2E-13159194IPR009057Homeodomain-like
PROSITE profilePS5129431.167179234IPR017930Myb domain
SuperFamilySSF466896.74E-32181277IPR009057Homeodomain-like
SMARTSM007174.8E-18183232IPR001005SANT/Myb domain
PfamPF002493.4E-18184230IPR001005SANT/Myb domain
CDDcd001672.97E-15186230No hitNo description
Gene3DG3DSA:1.10.10.604.5E-26195235IPR009057Homeodomain-like
PROSITE profilePS5129422.516235285IPR017930Myb domain
SMARTSM007177.4E-16235283IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-23236285IPR009057Homeodomain-like
PfamPF002491.4E-14236279IPR001005SANT/Myb domain
CDDcd001671.10E-11238281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MSSSSIPAAC SPIKEEVSEM QIEIQCMENK QPLAAPCSSA SEGSGCFFLK SPEIATPATA  60
SPTPRRTSGP MRRAKGGWTP EEDETLRLAV DKYKGKRWKK IVLFSGTELL SRGIYLNVQE  120
LNSYLKSTEN LTKFSQFRKR NLCCALCKRT VISVLPLQAE FFPDRTEVQC LHRWQKVLNP  180
ELVKGPWTKE EDDKIVELVN KYGPAKWSVI AKSLPGRIGK QCRERWHNHL NPDIRKDAWT  240
VEEESALMNA HRVYGNKWAE IAKVLPGRTD NAIKNHWNSS LKKKLEFYLA TGNLPPPATK  300
FCLLNDNADG DRDSKQSSAT KPFKDSDSAT QTSSGNTDSN EVGRDHFDAS SALLEEVAAT  360
RRNSVNEYAC SPVEYKPQLP NLEPIPEEVR INSKAYYERS IQRKEENVFG TPKHGNLYYK  420
SPLDYYFPSE ADRQRMYRYE CGCSPVTESP VGLMTPPCNK DSGLAATRSP ESFLREAART  480
FPNTPSIFRK RRRVVLAAKT DDDVVSVGVK EADQKEESKD SSDISPAGRE SLMLETTDVC  540
RDDEKLESNG NVFNVSPPYR LRAKRTAVIK SRQLEFTSAK EKQPDDETET SDLASEENKP  600
RDHVKKPVRF QEELKLCWEA SSCLGHLNTG TKMNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-6415928533159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-6415928533159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1488492RKRRR
2489493KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g002170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196490.0AY519649.1 Arabidopsis thaliana MYB transcription factor (At5g02320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090406.10.0PREDICTED: myb-related protein A-like
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLR0FDT20.0R0FDT2_9BRAS; Uncharacterized protein
STRINGXP_010452069.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]