PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g001700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 271aa    MW: 30220.5 Da    PI: 6.4021
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g001700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-082975346
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++ +a + l  +    +W tIa+ ++ g+t  ++  r+  
   Csa13g001700.1 29 TWTAEENKRFERALAFLDDKdnpeSWLTIAALIP-GKTVADVMQRYKE 75
                     5*****************99**************.**********975 PP
2Myb_DNA-binding461.2e-14149193347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + k++G+g+W+ Ia+ + + Rt+ q+ s+ qky
   Csa13g001700.1 149 PWTEDEHRRFLMGLKKYGKGDWRNIAKNFVTSRTPTQVASHAQKY 193
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-41975IPR009057Homeodomain-like
PROSITE profilePS512936.3652579IPR017884SANT domain
SMARTSM007171.6E-52679IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-82983IPR009057Homeodomain-like
CDDcd001676.69E-72976No hitNo description
PfamPF002491.8E-62975IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-13141196IPR009057Homeodomain-like
PROSITE profilePS5129421.099142198IPR017930Myb domain
SuperFamilySSF466895.04E-17144197IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-18145197IPR006447Myb domain, plants
SMARTSM007171.9E-12146196IPR001005SANT/Myb domain
CDDcd001672.18E-11149194No hitNo description
PfamPF002493.7E-12149193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSSSTMNRGI DMFSPESTNW IFQGVREATW TAEENKRFER ALAFLDDKDN PESWLTIAAL  60
IPGKTVADVM QRYKELEDDV SDIDAGLIPI PGYGGDASSG ANSDYFFGLE NSGHGYGYDY  120
VVGGKRSSPA MTDCFRPPIP EKERKKGVPW TEDEHRRFLM GLKKYGKGDW RNIAKNFVTS  180
RTPTQVASHA QKYFLRQLTD CKDKRRSSIH DITTVNIPDA DATTASAPTT LSSTPTTNSS  240
FDVFHQPNPH HGFAFAPASS YYYNAFPQWS *
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa13g001700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010452013.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-73DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV4LJX81e-158V4LJX8_EUTSA; Uncharacterized protein
STRINGXP_010452013.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148841619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-139MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]