PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Csa13g001060.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 231aa MW: 25624.6 Da PI: 7.9666

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa13g001060.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k Fs++ L H++ H Csa13g001060.1 81 FACTFCKKEFSTSQALGGHQNAH 103 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.1E-5	78	107	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.54E-6	78	108	No hit	No description
Pfam	PF13912	5.9E-6	80	105	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.655	81	108	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	83	103	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MELNLSTPTS CSSSSISSSS HEIIPRSKGK MKEKIAAEPA VETPRLEFRF LFDENIRNSG 60 FGGVLDDEAQ GARNDAKARV FACTFCKKEF STSQALGGHQ NAHKQERSLA KRRKEMEINY 120 PGLSFYSQYP PSSGISYNGS SSSQYDLRVR YNPNIAKTKQ PFPFNVFRCR LGYRGLNIPL 180 LSHLPVPQTD DLSKNLIANL EGNVHVQGEE KDQPDTDTSN DSDLDLSLKL *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa13g001060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010451928.1	1e-171	PREDICTED: zinc finger protein 4
TrEMBL	D7M6E6	1e-112	D7M6E6_ARALL; Zinc finger family protein
STRING	XP_010451928.1	1e-170	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8738	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	1e-83	C2H2 family protein