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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa13491s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Trihelix | ||||||||
Protein Properties | Length: 102aa MW: 11746 Da PI: 9.7376 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.8 | 2.4e-12 | 26 | 100 | 1 | 62 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkryk 62 +W+++ + +Li+a ++ +l+rg+l++++W+ev++++ ++ + r+ +qCk++++ l+k+yk Csa13491s010.1 26 CWSEEATFTLIQAWGNRFVELSRGNLRQKHWQEVANAVndrhfnsgrnvsaAKSQPYRTDVQCKNRIDTLKKKYK 100 8************************************************997777789****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-19 | 24 | 101 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MMDSVHDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG NRFVELSRGN LRQKHWQEVA 60 NAVNDRHFNS GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa13491s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118084 | 1e-133 | AK118084.1 Arabidopsis thaliana At3g58630 mRNA for unknown protein, complete cds, clone: RAFL19-33-K15. | |||
GenBank | AL137082 | 1e-133 | AL137082.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22. | |||
GenBank | BT005520 | 1e-133 | BT005520.1 Arabidopsis thaliana clone U50694 unknown protein (At3g58630) mRNA, complete cds. | |||
GenBank | CP002686 | 1e-133 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019100416.1 | 4e-71 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
Refseq | XP_019101939.1 | 5e-72 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 7e-25 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | R0FPF3 | 6e-69 | R0FPF3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010504818.1 | 2e-70 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9635 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 9e-57 | sequence-specific DNA binding transcription factors |