 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa12g082130.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
| Family | MYB_related | ||||||||
| Protein Properties | Length: 145aa MW: 15859 Da PI: 6.3531 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 36.7 | 9.5e-12 | 6 | 46 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
++T E+ +l++a ++lG++ W++Ia+ ++ gR+++ +++ w
Csa12g082130.1 6 SFTDKEEAILLEAYEKLGSK-WSLIAKLLP-GRSDEAVINNWT 46
69******************.*********.*******99885 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 19.625 | 1 | 53 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.01E-12 | 2 | 56 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 5.3E-15 | 2 | 52 | IPR009057 | Homeodomain-like |
| SMART | SM00717 | 3.2E-10 | 3 | 51 | IPR001005 | SANT/Myb domain |
| Pfam | PF00249 | 9.5E-11 | 6 | 46 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 5.93E-9 | 6 | 49 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 145 aa Download sequence Send to blast |
MINKASFTDK EEAILLEAYE KLGSKWSLIA KLLPGRSDEA VINNWTRIMK RKTEDSASDE 60 SREINNSSRK MPQEETTDLI TDAMQCSALH HHLSIVHAVP LAMSAPPHVS ISQPSSSSSL 120 PSKAEDTKVK IPPKFIDFLG VGDS* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa12g082130.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010451829.1 | 1e-101 | PREDICTED: transcriptional activator Myb-like | ||||
| TrEMBL | R0H196 | 1e-38 | R0H196_9BRAS; Uncharacterized protein | ||||
| STRING | XP_010451829.1 | 1e-100 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM27384 | 3 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G29020.2 | 7e-17 | myb domain protein 110 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|