PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g077840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 469aa    MW: 51003.9 Da    PI: 8.8596
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g077840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.8e-09141165126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +k + C+++ + G Ck+G++C+F H+
  Csa12g077840.1 141 PKKSVCKYWKA-GNCKRGEQCQFLHC 165
                     68999******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-6138163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544140167IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-7140166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.87E-6141164IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6141165IPR000571Zinc finger, CCCH-type
SuperFamilySSF509783.85E-44163222IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.104.5E-10164207IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.6E-4171210IPR001680WD40 repeat
PROSITE profilePS5008213.884178219IPR001680WD40 repeat
PROSITE profilePS5029418.616178382IPR017986WD40-repeat-containing domain
PfamPF117151.8E-6193228No hitNo description
PROSITE patternPS006780197211IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-7197211IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.140.10.101.3E-5208279IPR027295Quinoprotein alcohol dehydrogenase-like domain
SMARTSM00320210250287IPR001680WD40 repeat
SuperFamilySSF509783.85E-44260465IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.5E-29280465IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.2E-4295333IPR001680WD40 repeat
PfamPF004001.4E-5298333IPR001680WD40 repeat
PROSITE profilePS5008210.809317342IPR001680WD40 repeat
PROSITE patternPS006780320334IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-7320334IPR020472G-protein beta WD-40 repeat
SMARTSM003207.0E-5336373IPR001680WD40 repeat
PfamPF004000.002338372IPR001680WD40 repeat
PRINTSPR003201.3E-7360374IPR020472G-protein beta WD-40 repeat
SMARTSM003202.5424461IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDEATVLDSV VQSSKVGIFS MFSMNYEAPR RYSQGRTFGV KRQQDFAADV VSRRPYAPYD  60
NTMRKSPNKV SRNLVWTSKE YKSPEGNRPR KYEANGSTKP PVLGKGCSVV PNQPRKNATY  120
GPRSSPISDT RGPVSRAHSS PKKSVCKYWK AGNCKRGEQC QFLHCWSCFP GLAMVAALEG  180
HKKDIKGIAL PEGSDKLFSV SSDGTLRIWD CHTGQCVHTI NLQAEAGSLI SEGPWVFLGL  240
QNAVKAFNVQ TSKDLHLDGA VGQLHAMTVA NGMLFAGTSS GSISVWKATD SESDPFKYIT  300
SLEGHHSGEV TCFVVGGQLL YSGSVDKTIK VWDLNTLQCI TTLKQHTDTV TSLLCWDKCL  360
ISSSLDGTIK VWACSENDVF KVTHTRRQEQ SAVHALCGMH DAEAKPIIFC SYQNGTVGIS  420
DLPSFEERGK MFSTHTISTL TVGPGGLLFS GDKGGNLRVW SLAAGPKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-1816346810320Tako8
6g6n_A2e-1816346810320Tako8
6g6n_B2e-1816346810320Tako8
6g6n_C2e-1816346810320Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g077840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450592.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like isoform X1
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGXP_010450592.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein