PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g077450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 179aa MW: 20530 Da PI: 8.1875 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 50.8 | 4.8e-16 | 2 | 66 | 32 | 97 |
DUF573 32 ddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfsk.ehdqkifelskkiWg 97 +d++a+y +++s+++++sk+ql +Ki ++K++f++ +++ k +sf+ ++d++ifels iWg Csa12g077450.1 2 SDWNAIYTRIRGSMESDFSKRQLQDKINKMKRRFNRARSN--GRKIISFTDdADDKQIFELSTVIWG 66 69***********************************999..666777776157789*********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 9.5E-13 | 2 | 66 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MSDWNAIYTR IRGSMESDFS KRQLQDKINK MKRRFNRARS NGRKIISFTD DADDKQIFEL 60 STVIWGGNNT KTASCENYMD QRKEDDVPCG EQHVLIDDGE KDKSEDLNVL QEALEMAASF 120 RSLGSYQQRS LLRNLKNIGD TQRKELTDEW KALLAQDMQL GIKKQSFYAK LVNTGFSA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g077450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010450559.1 | 1e-130 | PREDICTED: GLABROUS1 enhancer-binding protein-like 3 | ||||
Swissprot | Q9SJM4 | 1e-16 | STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3 | ||||
TrEMBL | R0F6M4 | 2e-72 | R0F6M4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010450559.1 | 1e-129 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14516 | 8 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36340.1 | 5e-19 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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