PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g074610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 355aa    MW: 39786.4 Da    PI: 7.0284
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g074610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-1691135147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+ E+e++v+a k++G   W++I +++g ++t+ q++s+ qk+
   Csa12g074610.1  91 REKWTETEHEKFVEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 135
                      789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1585139IPR009057Homeodomain-like
PROSITE profilePS5129421.71286140IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-988136IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-1689138IPR006447Myb domain, plants
SMARTSM007171.9E-1290138IPR001005SANT/Myb domain
PfamPF002492.1E-1391134IPR001005SANT/Myb domain
CDDcd001674.16E-993136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
LTLLLSLNYY LLSIPPISSN SLSLSLLQFQ INFSGEKTSS DRIFKSSSSS TSMAMQERCE  60
SLCDGGSDEL ISSTDAFYLK TRKPYTITKQ REKWTETEHE KFVEALKLYG RAWRRIEEHV  120
GTKTAVQIRS HAQKFFSKVA RDFGVSSETI EIPPPRPKRK PMHPYPRKLV IPDAKEMVYG  180
DLTGANKLVQ DDDDRSPTSV LSAHGSDRLG SIGSNSPNSS SADYQHSPGH ELSSHTEESL  240
SPESETKQSL KLFGKTFVVG DYNSSTSSDD SEDVKKKLDS ETHESVLYSS STSSSENMET  300
EMTLRVSPEF KRSERSAFSQ MKSSGTEMRG FMPYKKRVKV EENIDNGKMS YPLW*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator for cold-responsive gene expression and cold tolerance. Part of a regulatory feedback loop that controls a subset of the circadian outputs and modulates the central oscillator. Negatively self-regulates its own expression. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:23371945}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g074610.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by light. {ECO:0000269|PubMed:17587236, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195151e-170AY519515.1 Arabidopsis thaliana MYB transcription factor (At5g37260) mRNA, complete cds.
GenBankBT0109471e-170BT010947.1 Arabidopsis thaliana At5g37260 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010450482.10.0PREDICTED: protein REVEILLE 2-like
SwissprotF4K5X61e-165RVE2_ARATH; Protein REVEILLE 2
TrEMBLR0F5Q41e-170R0F5Q4_9BRAS; Uncharacterized protein
STRINGXP_010450482.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144321922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.11e-130MYB_related family protein
Publications ? help Back to Top
  1. Chaudhury A,Okada K,Raikhel NV,Shinozaki K,Sundaresan V V
    A weed reaches new heights down under
    Plant Cell, 1999. 11(10): p. 1817-26
    [PMID:10521514]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Jiang Z,Xu G,Jing Y,Tang W,Lin R
    Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12377
    [PMID:27506149]