PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g062990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 346aa MW: 38016.9 Da PI: 6.6181 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 119.7 | 1.5e-37 | 138 | 228 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 fqrlwse+Dei+lLqG+idfka++g+sp+dd+++f++++k++isf+vsk q+ +Kir+LKkK+ k+kk + s++++hd+k+++l+k iW Csa12g062990.1 138 PFQRLWSEDDEISLLQGMIDFKAEKGTSPYDDMNGFFDMAKNNISFDVSKIQFGDKIRSLKKKYFAKQKK-----KGSLESSHDKKCLGLAKYIW 227 69******************************************************************99.....67999*************** PP DUF573 97 g 97 Csa12g062990.1 228 V 228 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.0E-28 | 139 | 227 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAKKVLNPLE DPPTASSSGD EEVETSSGEE DVKQTSDSSF EEDDPKDPAT SKTLKTTPAN 60 APSTESEGSE SESEPSPEKP VAVVTRLTTK PKKKEGNEST APKPGKKRAS EAGTTSKDMH 120 VKKAKKAKKV SGDDEKKPFQ RLWSEDDEIS LLQGMIDFKA EKGTSPYDDM NGFFDMAKNN 180 ISFDVSKIQF GDKIRSLKKK YFAKQKKKGS LESSHDKKCL GLAKYIWVSD GMALESAVKL 240 ANGKLKKVES LKSGGDDNVG EEKEVVIPRG DSESSNLFEK SFLVRTIAGL GVDEFSVKEK 300 WSKVSVETKN RIEEKLKLVE AKEYELLRLK SDILKEVAYV MTQGI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g062990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010450191.1 | 0.0 | PREDICTED: probable transcription factor At1g44810 | ||||
Swissprot | Q9LPF0 | 1e-105 | STKLB_ARATH; Probable transcription factor At1g44810 | ||||
TrEMBL | R0G5T3 | 1e-113 | R0G5T3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010450191.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44810.1 | 2e-90 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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