PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g062990.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 346aa MW: 38016.9 Da PI: 6.6181

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g062990.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.7	1.5e-37	138	228	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 fqrlwse+Dei+lLqG+idfka++g+sp+dd+++f++++k++isf+vsk q+ +Kir+LKkK+ k+kk + s++++hd+k+++l+k iW Csa12g062990.1 138 PFQRLWSEDDEISLLQGMIDFKAEKGTSPYDDMNGFFDMAKNNISFDVSKIQFGDKIRSLKKKYFAKQKK-----KGSLESSHDKKCLGLAKYIW 227 69****************************************************************99.....67999************* PP DUF573 97 g 97 Csa12g062990.1 228 V 228 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.0E-28	139	227	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MAKKVLNPLE DPPTASSSGD EEVETSSGEE DVKQTSDSSF EEDDPKDPAT SKTLKTTPAN 60 APSTESEGSE SESEPSPEKP VAVVTRLTTK PKKKEGNEST APKPGKKRAS EAGTTSKDMH 120 VKKAKKAKKV SGDDEKKPFQ RLWSEDDEIS LLQGMIDFKA EKGTSPYDDM NGFFDMAKNN 180 ISFDVSKIQF GDKIRSLKKK YFAKQKKKGS LESSHDKKCL GLAKYIWVSD GMALESAVKL 240 ANGKLKKVES LKSGGDDNVG EEKEVVIPRG DSESSNLFEK SFLVRTIAGL GVDEFSVKEK 300 WSKVSVETKN RIEEKLKLVE AKEYELLRLK SDILKEVAYV MTQGI*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MAKKVLNPLE DPPTASSSGD EEVETSSGEE DVKQTSDSSF EEDDPKDPAT SKTLKTTPAN  60
APSTESEGSE SESEPSPEKP VAVVTRLTTK PKKKEGNEST APKPGKKRAS EAGTTSKDMH  120
VKKAKKAKKV SGDDEKKPFQ RLWSEDDEIS LLQGMIDFKA EKGTSPYDDM NGFFDMAKNN  180
ISFDVSKIQF GDKIRSLKKK YFAKQKKKGS LESSHDKKCL GLAKYIWVSD GMALESAVKL  240
ANGKLKKVES LKSGGDDNVG EEKEVVIPRG DSESSNLFEK SFLVRTIAGL GVDEFSVKEK  300
WSKVSVETKN RIEEKLKLVE AKEYELLRLK SDILKEVAYV MTQGI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g062990.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010450191.1	0.0	PREDICTED: probable transcription factor At1g44810
Swissprot	Q9LPF0	1e-105	STKLB_ARATH; Probable transcription factor At1g44810
TrEMBL	R0G5T3	1e-113	R0G5T3_9BRAS; Uncharacterized protein
STRING	XP_010450191.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G44810.1	2e-90	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]