PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g060160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 472aa MW: 52921.9 Da PI: 8.1503 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.9 | 1.8e-34 | 24 | 114 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d+++++++sws+n+nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF ++ F k+kk+ll++ Csa12g060160.1 24 FLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFLNDDFIKDKKHLLKN 109 9****************************************************************999.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k Csa12g060160.1 110 IHRRK 114 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.5E-36 | 20 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.7E-60 | 20 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.9E-34 | 21 | 113 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.5E-19 | 24 | 47 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.1E-29 | 24 | 113 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-19 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 63 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-19 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MNGALGNSSA SVSGGEGVGG PAPFLVKTYE MVDDSSTDQI VSWSANNNSF IVWNHAEFSR 60 LLLPTYFKHN NFSSFIRQLN TYGFRKIDPE RWEFLNDDFI KDKKHLLKNI HRRKPIHSHS 120 HPPTSSADQE RAALQEQMDK LSREKAAIEA KLLKFKQQKA VAKHQFDEMT DHVDDMEKRQ 180 KKLLNFLETA IRNPTFVKNF GRKVEQLDIS AYNKKRRLPQ VEQSKPPSED SHLDNSSGSS 240 RPESGNIFHQ NFSNKLRLEL SPAVSDMNMV SHSIQSSNEE GSSPKGILSG GDPKTILTRR 300 EGLPFAPEAL ELADTGTCPR RLLLNDNTRV ETLQQRLTSS EETDGSFSCH LNLTLASAPL 360 PDKTASQIAK ATHKSQEIGR CTELNFKSIE TSASEKNRGR QQEVGGSQAK AAPPARVNDV 420 FWEQFLTERP GSSENEEASS TYRGNPYEEQ EDKRNGNIIS RNTNHTKQLT L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-22 | 3 | 113 | 1 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-22 | 3 | 113 | 1 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-22 | 3 | 113 | 1 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g060160.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY039528 | 0.0 | AY039528.1 Arabidopsis thaliana AT4g13980/dl3030c mRNA, complete cds. | |||
GenBank | BT001056 | 0.0 | BT001056.1 Arabidopsis thaliana At4g13980/dl3030c mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010450121.1 | 0.0 | PREDICTED: heat stress transcription factor A-5 | ||||
Swissprot | Q94BZ5 | 0.0 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | R0GW90 | 0.0 | R0GW90_9BRAS; Uncharacterized protein | ||||
STRING | XP_010450121.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10134 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 0.0 | HSF family protein |
Publications ? help Back to Top | |||
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