PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g049690.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Trihelix

Protein Properties

Length: 434aa MW: 47948.9 Da PI: 7.6533

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g049690.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	67.7	2.4e-21	34	123	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+ aL++a+++++ +lrrg+l++++W++v++++ +g +s++qC++k+e+l+kry+ +k+++ +r + ss++ +f l+ Csa12g049690.1 34 CWTDEETAALVNAYKDKWFALRRGNLRAADWDDVAAAVssssTVGGTPKSAIQCRHKIEKLRKRYRGEKQRALNRPGKFSSSWDLFPILD 123 8***********************************9998899**************************9999*****9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-21	33	125	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MSIPDDGSPV GMAIDSSTAV TVATTTTRRV PPPCWTDEET AALVNAYKDK WFALRRGNLR 60 AADWDDVAAA VSSSSTVGGT PKSAIQCRHK IEKLRKRYRG EKQRALNRPG KFSSSWDLFP 120 ILDAMGFAPV TPAAVETYDP DVDHDDESNG LDGFRARSKR SGKFSGGYSD SPREGYGVRS 180 RARSNMKLYS GFKSEFDSDH DSGSGFGLKR KYNGNQKVSA DFDADSDDEI VLVPKTTRLR 240 THGKPSSGDF SHSGGGGFPL KSFGDRNFSS HGFKPKNFSK TEPNFSQDLD YDDEYDDDRA 300 EREGFNPRIQ SSRSSSRGNG YSRKEGGSYP RNAGVSNGYG SSSRFKHEQM NAAAEVESDP 360 IDEVVSSVKM LTEMFVRVEN SKMEMMREME KSRMEMELKH CQMMLESQQQ IIGAFAEALS 420 EKKSTTNARR PVS*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MSIPDDGSPV GMAIDSSTAV TVATTTTRRV PPPCWTDEET AALVNAYKDK WFALRRGNLR  60
AADWDDVAAA VSSSSTVGGT PKSAIQCRHK IEKLRKRYRG EKQRALNRPG KFSSSWDLFP  120
ILDAMGFAPV TPAAVETYDP DVDHDDESNG LDGFRARSKR SGKFSGGYSD SPREGYGVRS  180
RARSNMKLYS GFKSEFDSDH DSGSGFGLKR KYNGNQKVSA DFDADSDDEI VLVPKTTRLR  240
THGKPSSGDF SHSGGGGFPL KSFGDRNFSS HGFKPKNFSK TEPNFSQDLD YDDEYDDDRA  300
EREGFNPRIQ SSRSSSRGNG YSRKEGGSYP RNAGVSNGYG SSSRFKHEQM NAAAEVESDP  360
IDEVVSSVKM LTEMFVRVEN SKMEMMREME KSRMEMELKH CQMMLESQQQ IIGAFAEALS  420
EKKSTTNARR PVS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g049690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118245	0.0	AK118245.1 Arabidopsis thaliana At4g17060 mRNA for unknown protein, complete cds, clone: RAFL19-55-A07.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010449671.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
Swissprot	O23550	0.0	FRIP2_ARATH; Protein FIP2
TrEMBL	A0A178UUN7	0.0	A0A178UUN7_ARATH; FIP2
STRING	XP_010449672.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-21	Trihelix family protein

Publications ? help Back to Top
Sakai T, et al. The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots. Plant J., 2012. 70(2): p. 303-14 [PMID:22122664]