PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g047050.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 521aa    MW: 57925 Da    PI: 8.0249
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g047050.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.8e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Csa12g047050.1  7 CYHCGVTNTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.7E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-11546No hitNo description
CDDcd002021.47E-16651No hitNo description
PfamPF003205.0E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.095740IPR000679Zinc finger, GATA-type
PfamPF139192.7E-10274368IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MGKQGPCYHC GVTNTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RADGHESDDH  60
HRFQRMKSIS LNYKNKETKM LKRKAIQDNN IIIKRPALDF NYGLKKAVIE EDASNRSSSG  120
SAVSNSESCA QFSSADGSEL TGPSQSNAWD TTVPCKRRTC VGRPKSSSVE KLTKDLYNIL  180
QEQQSSCLSV SSEEDLLFEN EMSMVSVEIG HGSVLMKNPH SFAREEESEA SSLSSIENKS  240
SISEAYSHSV KRVEIGAERG SYYGGQAIKQ EQFKRTKSQA ERVHVLGSHS SPLCSIDLKD  300
VFNFDEFIKQ FTDEEQKKLM KLLPQIDSHN LPDSLGMMFE SAQFKDNFSL FQQLIADGVF  360
DMSSSSGAKP EDIRTFKKLA LTDFNKSRLV ESYYLLKERE KETGNSVTTT SKSSNPNVPK  420
NIVTIKRRCE DQAQLKSESR GLMRSPKRVI KMKASHESKV LTENNVSCFN PRSLASVFAQ  480
EGGGSAVFGY EGNCSSDQDL LLLDLPSNGS FPQAELLHQI *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g047050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0625620.0AY062562.1 Arabidopsis thaliana Unknown protein (Z97343.42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449595.10.0PREDICTED: GATA transcription factor 26
SwissprotQ8W4H10.0GAT26_ARATH; GATA transcription factor 26
TrEMBLR0F9D00.0R0F9D0_9BRAS; Uncharacterized protein
STRINGXP_010449595.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.30.0GATA transcription factor 26