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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g042130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 186aa MW: 21706 Da PI: 9.7837 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 86.4 | 2.3e-27 | 13 | 107 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsef 90 f v t++dv+k++rlvlp++ ae+h +++++++ l+++d++g+ W+++++y+++ g+yv+tkGW++Fvk+++L+egD+v F++ g++++ Csa12g042130.1 13 FHIVVTSNDVGKLNRLVLPRQDAERHfppyASNNQNGTLLSFQDKNGKMWRFRYSYWNTLGTYVMTKGWSRFVKEKKLEEGDMVSFERGfGDESE 107 6678899***********************66677889*************************************************66444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.6E-35 | 7 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.4E-27 | 9 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.63E-23 | 11 | 100 | No hit | No description |
PROSITE profile | PS50863 | 14.128 | 13 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-25 | 13 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-18 | 13 | 119 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MMMVPAPKKE HMFHIVVTSN DVGKLNRLVL PRQDAERHFP PYASNNQNGT LLSFQDKNGK 60 MWRFRYSYWN TLGTYVMTKG WSRFVKEKKL EEGDMVSFER GFGDESERWK LYIDWSHRRD 120 MSLVQSHQFA KDIIDFLCVQ KDLGDSNALV GRLSAACERR GIKPKDNPFR SLAVIRYLQM 180 VEAFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-45 | 9 | 118 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-45 | 9 | 118 | 4 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g042130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001322175.1 | 6e-69 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9MAN1 | 1e-68 | NGA3_ARATH; B3 domain-containing transcription factor NGA3 | ||||
TrEMBL | A0A1P8AT85 | 1e-67 | A0A1P8AT85_ARATH; AP2/B3-like transcriptional factor family protein | ||||
STRING | Bo5g002790.1 | 5e-68 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 4e-71 | B3 family protein |
Publications ? help Back to Top | |||
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