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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g041920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 171aa MW: 19749.9 Da PI: 9.3734 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 49.2 | 1.4e-15 | 48 | 143 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HH.HHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldee.efakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F +ye++ed++ + +isw++ +n fv++ +e ++ +k+L F ++ F+ L YgF++vk++ ++ eF+++ F +g+ + l+ Csa12g041920.1 48 FYVDIYELVEDPSSDPIISWNKGNNGFVMCSQEeRIRSKILM-PFYCGKLCEFLSELSYYGFRRVKKKAGS-----GKLEFRNEDFVRGQPKRLK 136 88899***********************99865156777775.577899999*****************98.....67****************9 PP XXXXXXX CS HSF_DNA-bind 96 kikrkks 102 ++ k+s Csa12g041920.1 137 DMMLKAS 143 9887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.0E-26 | 44 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 8.1E-18 | 47 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 7.35E-19 | 47 | 138 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.3E-6 | 48 | 71 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.9E-15 | 48 | 138 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-6 | 99 | 111 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MMRVFFRVDE IILNFGGLLD IIDLGILRVE NEEEGMAEKY PNGVMGSFYV DIYELVEDPS 60 SDPIISWNKG NNGFVMCSQE ERIRSKILMP FYCGKLCEFL SELSYYGFRR VKKKAGSGKL 120 EFRNEDFVRG QPKRLKDMML KASRKRKAKF RAQQATKDAV DRLQLQSLHV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g041920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010449325.2 | 1e-122 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | Q8L7H2 | 7e-52 | Q8L7H2_ARATH; Winged-helix DNA-binding transcription factor family protein | ||||
STRING | XP_010449325.1 | 5e-96 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G19630.1 | 2e-53 | HSF family protein |