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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa12g038910.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
LSD |
| Protein Properties |
Length: 183aa MW: 19163 Da PI: 8.5642 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa12g038910.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 32.8 | 1.1e-10 | 1 | 17 | 9 | 25 |
zf-LSD1 9 sYPrGApsVRCalCdtV 25
+YPrGA++VRCalC+t+
Csa12g038910.1 1 MYPRGASNVRCALCNTI 17
9**************97 PP
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| 2 | zf-LSD1 | 45.9 | 9.2e-15 | 43 | 66 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
CggCrt+L+Y+rGA+sVRC++C+t
Csa12g038910.1 43 CGGCRTMLMYTRGASSVRCSCCQT 66
***********************9 PP
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| 3 | zf-LSD1 | 49.1 | 9.5e-16 | 90 | 114 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Crt+L+YP+GA+sV+Ca+C++V
Csa12g038910.1 90 CGHCRTTLMYPYGASSVKCAVCQFV 114
***********************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 183 aa
Download sequence Send
to blast |
MYPRGASNVR CALCNTINMV PPPHPHPPPP HAHAGMDMAH IVCGGCRTML MYTRGASSVR 60
CSCCQTTNLV PGLSNQVPHA PSNQVAQINC GHCRTTLMYP YGASSVKCAV CQFVTNVNMS 120
NGRVPLPTNR PNGTACPGTM PSSSTSTPPS QTQTVVVENP MSVDESGKLV SNVVVGVTTD 180
KK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | ATU87833 | 1e-152 | U87833.1 Arabidopsis thaliana zinc-finger protein Lsd1 (LSD1) mRNA, complete cds. |
| GenBank | AY080824 | 1e-152 | AY080824.1 Arabidopsis thaliana putative zinc-finger protein Lsd1 (At4g20380) mRNA, complete cds. |
| GenBank | AY087794 | 1e-152 | AY087794.1 Arabidopsis thaliana clone 38456 mRNA, complete sequence. |
| GenBank | AY117316 | 1e-152 | AY117316.1 Arabidopsis thaliana putative zinc-finger protein Lsd1 (At4g20380) mRNA, complete cds. |
| Publications
? help Back to Top |
- Spedaletti V, et al.
Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana.
Biochemistry, 2008. 47(17): p. 4936-47
[PMID:18393445] - Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties.
Plant Cell Rep., 2016. 35(3): p. 527-39
[PMID:26754794] - Czarnocka W, et al.
The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.
Plant Cell Environ., 2017. 40(11): p. 2644-2662
[PMID:28555890] - Bernacki MJ, et al.
LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana.
Physiol Plant, 2019. 165(2): p. 369-382
[PMID:30461017]
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