PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g036740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 726aa    MW: 80879 Da    PI: 8.0197
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g036740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.3e-16327427199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k+l+ sd+++ gr+vlpkk+ae++  +++ +e++ l++ d+ g++W +++++  ++ks+ yvl+ G     ++ +L++gD+v+F + +  e++
  Csa12g036740.1 327 FEKILSASDTGRVGRMVLPKKCAEAFlpQISDPEGVPLKILDPVGKEWIFRFRFwaTNKSRIYVLE-GVGPCIQSLRLQTGDTVIFNRLD-PERK 419
                     99**************************777789999***************99666666669988.********************765.7888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     l+++++++
  Csa12g036740.1 420 LMLGFRKA 427
                     89888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135904198IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.105.4E-26316437IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-19325426No hitNo description
SuperFamilySSF1019364.45E-18325426IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.56327428IPR003340B3 DNA binding domain
SMARTSM010191.5E-17327428IPR003340B3 DNA binding domain
PfamPF023627.8E-13327427IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MLSSSSMSSS RFCFNHECSE FKLQHCRPGW RLRTGDFVDL CDRCASVYEQ GKFCDVFHLK  60
ASGWRCCESC GKRVHCGCIV SASAYMLLDA GGIDCLACAR KKVALGPNFS PSPSFLFQSP  120
ISERFKDLSI NWSSSTRSNQ MSFQPPSCSG PSFLQFDLRN RGDNNEFSQL TSKERATACS  180
MERKRGLNNM IGKLVSENSK NYEVSPFTNG TNVNVYHPLI SLKEGSCGTQ LAFPVPITTP  240
IERTGHSRLG GSHLWHTANC SPLSRLHNDL NGGADSPFEC KSRNVRTHFD TPGTYQVVPQ  300
YWPKVSYINQ VLQNQSKESE SIVTHLFEKI LSASDTGRVG RMVLPKKCAE AFLPQISDPE  360
GVPLKILDPV GKEWIFRFRF WATNKSRIYV LEGVGPCIQS LRLQTGDTVI FNRLDPERKL  420
MLGFRKASVA QSSDQETDST NNNRDTCTNR DAEPADIHSL SKVKKSAYIT KDTSGVEISS  480
SKKKSSMMIT RGKRRKVEKG DHIELKLTWE EAQGFLLPPP NFTPSKVVIE GSEFEEYEDA  540
PIIGKPIDDT GSTCTPDQEP VAEQQDEETM EDVEGLLMSP KTTKKHPRHR NDCTCIVCIQ  600
SPSGAAGKRR RRSLLLRREK KQMGKEDNAH MELEQPNSDN EIRQSANNSE NHEGLASPLK  660
GQLDLNFKPE KDGESLPGSN KTTKKKTLHH DDTVKSSFKS PSSSTAHSQI NKEEEETADT  720
TTSSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C9e-433074303126B3 domain-containing transcription repressor VAL1
5yzz_C9e-433074303126B3 domain-containing transcription repressor VAL1
5z00_C9e-433074303126B3 domain-containing transcription repressor VAL1
5z00_G9e-433074303126B3 domain-containing transcription repressor VAL1
5z00_K9e-433074303126B3 domain-containing transcription repressor VAL1
5z00_M9e-433074303126B3 domain-containing transcription repressor VAL1
6j9a_A9e-433074304127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481495KKKSSMMITRGKRRK
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in plant development. {ECO:0000269|PubMed:17158584}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g036740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0226030.0AL022603.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project).
GenBankAL1615550.0AL161555.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010449041.10.0PREDICTED: B3 domain-containing transcription factor VAL3-like
SwissprotO654200.0VAL3_ARATH; B3 domain-containing transcription factor VAL3
TrEMBLR0GUV90.0R0GUV9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010449041.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3