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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Csa12g036460.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 768aa MW: 83747.3 Da PI: 5.6433 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 60.4 | 2.9e-19 | 62 | 117 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t+ q++eLe++F+++++p+ ++r+eL+++l+L+ qVk+WFqN+R+++k
Csa12g036460.1 62 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELSLEPLQVKFWFQNKRTQMK 117
688999***********************************************998 PP
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| 2 | START | 215.8 | 1.4e-67 | 261 | 480 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83
ela +a++elv++a+ ++p+Wv+ e++n++e+ ++f+++ + ++ea+r+s+vv+m++ +l e+l+d++ qW+ + +a tle
Csa12g036460.1 261 ELAVAAMEELVRMAQTGDPLWVSNEnsvEILNEEEYFRTFPRGIGpkpmgLRSEASRESTVVIMNHINLIEILMDVN-QWSSVFCgivsRALTLE 354
57899******************99999**************999********************************.******99999****** PP
EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
v+s+g galq+m+ae+q++splvp R+ +fvRy++q+++g w++vdvS+ds ++ p + R++++pSg+li++++ng+skvtwveh++
Csa12g036460.1 355 VLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGIWAVVDVSLDSLRPSP----ITRSRRRPSGCLIQELQNGYSKVTWVEHTE 445
***********************************************************99....7***************************** PP
--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
+++r++h+++++lv++gla+gak+wvatl+rqce+
Csa12g036460.1 446 VDDRSVHNMYKPLVNTGLAFGAKRWVATLDRQCER 480
*********************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 43 | 117 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 1.63E-18 | 51 | 119 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 17.006 | 59 | 119 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 1.5E-17 | 60 | 123 | IPR001356 | Homeobox domain |
| Pfam | PF00046 | 7.5E-17 | 62 | 117 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 2.68E-18 | 62 | 120 | No hit | No description |
| PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
| PROSITE profile | PS50848 | 45.603 | 252 | 483 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 2.61E-35 | 254 | 482 | No hit | No description |
| CDD | cd08875 | 6.16E-126 | 256 | 479 | No hit | No description |
| SMART | SM00234 | 1.2E-79 | 261 | 480 | IPR002913 | START domain |
| Pfam | PF01852 | 6.3E-57 | 262 | 480 | IPR002913 | START domain |
| Gene3D | G3DSA:3.30.530.20 | 7.7E-6 | 360 | 479 | IPR023393 | START-like domain |
| SuperFamily | SSF55961 | 8.55E-23 | 501 | 679 | No hit | No description |
| SuperFamily | SSF55961 | 8.55E-23 | 720 | 759 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 768 aa Download sequence Send to blast |
MYHPNMFESH HHMFEMTPKN SENDLGITGS QEDFETKSGA EVTMENPLEE ELQDPNQRPN 60 KKKRYHRHTQ RQIQELESFF KECPHPDDKQ RKELSRELSL EPLQVKFWFQ NKRTQMKAQH 120 ERHENQILKS ENDKLRAENN RYKDALSNAT CPNCGGPAAI GEMSFDEQHL RIENARLREE 180 IDRISAIAAK YVGKPLMANS SPFPQLTSSH HIPSRSLDLE VGNFGNNSNS QAGFVGEMYG 240 TSDILRSVSI PSEADKPMIV ELAVAAMEEL VRMAQTGDPL WVSNENSVEI LNEEEYFRTF 300 PRGIGPKPMG LRSEASREST VVIMNHINLI EILMDVNQWS SVFCGIVSRA LTLEVLSTGV 360 AGNYNGALQV MTAEFQVPSP LVPTRENYFV RYCKQHSDGI WAVVDVSLDS LRPSPITRSR 420 RRPSGCLIQE LQNGYSKVTW VEHTEVDDRS VHNMYKPLVN TGLAFGAKRW VATLDRQCER 480 LASSMASNIP AGDLSVITSA EGRKSMLKLA ERMVMSFCSG VGASTAHAWT TLSTTGSDDV 540 RVMTRKSMDD PGRPPGIVLS AATSFWIPVA PKRVFDFLRD ENSRSEWDIL SNGGLVQEMA 600 HIANGRDPGN SVSLLRVNSG NSGTSNMLIL QESCTDASGS YVIYAPVDIM AMNVVLSGGD 660 PDYVALLPSG FAILPDGSAR VGGGSASTGA GGSGAEGGGG GGGEGNNLEV VTTTTGNNGG 720 SLLTVAFQIL VDSVPTAKLS LGSVATVNSL IKCTVERIKA ALACEGA* |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Csa12g036460.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK229970 | 0.0 | AK229970.1 Arabidopsis thaliana mRNA for L1 specific homeobox gene ATML1/ovule-specific homeobox protein A20, complete cds, clone: RAFL22-43-B20. | |||
| GenBank | AY091104 | 0.0 | AY091104.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds. | |||
| GenBank | AY150491 | 0.0 | AY150491.1 Arabidopsis thaliana putative L1-specific homeobox gene ATML1/ovule-specific homeobox protein A20 (At4g21750) mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010449009.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_010449010.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Refseq | XP_019089735.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
| Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
| TrEMBL | R0GNC9 | 0.0 | R0GNC9_9BRAS; Uncharacterized protein | ||||
| STRING | XP_010449009.1 | 0.0 | (Camelina sativa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM491 | 28 | 149 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G21750.2 | 0.0 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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