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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa12g030710.1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
ERF |
| Protein Properties |
Length: 362aa MW: 39501.9 Da PI: 6.0817 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa12g030710.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 58.7 | 1.5e-18 | 128 | 178 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++++GVr+++ +g+W+AeIrdp + r r +lg++ taeeAa ++ a+ +l+g
Csa12g030710.1 128 KKFQGVRQRP-WGKWAAEIRDPQK---RVRLWLGTYNTAEEAAMVYDSAAIQLRG 178
589*******.**********944...5*************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MEAEKTTMVV PRVKFTEHKT NTTRIVPDLT NNHHQTTRVL RISVTDPYAT DSSSDDEDEA 60
HNNSFVSKRR RIKKFVNEVV LDSGASVVAN SETETESKKR KQRAVKSEPT TASPVVSTTT 120
TTTATGEKKF QGVRQRPWGK WAAEIRDPQK RVRLWLGTYN TAEEAAMVYD SAAIQLRGPD 180
ALTNFSVSPT TTTTTTTTAE KKSPPPSPVK KKKKTTTKKK NSKTKNSVTA SSTISGSSSN 240
DCLCSPVSVL RSPFTVDEFS GSSTAAVVVK EEPSMTTVSE TFSDFSAPLF SDDDLFDFRS 300
SVVPDYLGGG DLFGEDLFAV DMCTDMNFGF DFGSSGLSSW QMEDHFQDIG DLFGSDPLLA 360
V*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 67 | 71 | KRRRI |
| 2 | 209 | 219 | KKKKKTTTKKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ckurshumova W,Berleth T
Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
Plant Signal Behav, 2015. 10(7): p. e993293
[PMID:26098229] - Raines T, et al.
The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
Plant J., 2016. 85(1): p. 134-47
[PMID:26662515] - Jeon J,Cho C,Lee MR,Van Binh N,Kim J
CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
Plant Cell, 2016. 28(8): p. 1828-43
[PMID:27432872]
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