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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa12g030420.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
ARF |
Protein Properties |
Length: 628aa MW: 70900.2 Da PI: 7.0525 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa12g030420.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 77.1 | 1.9e-24 | 115 | 216 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f kvlt sd++++g +++ +k+a+e+ + ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +
Csa12g030420.1 115 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RGE 205
88****************************9643..445569************************************************..449 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
++el+v+v+r+
Csa12g030420.1 206 NGELRVGVRRA 216
999******97 PP
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2 | Auxin_resp | 112 | 5.6e-37 | 241 | 320 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a ha++ k++F v+Y+Pr+ s+F+++++k+++a+++k+svGmRfkm+fe+eds+err+sGtv+gv+d++p +W++SkWr+L+
Csa12g030420.1 241 ACHATQAKTMFIVYYKPRT--SQFIISLNKYLEAMNNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLE 320
6799**************6..9*************************************************.*********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 628 aa
Download sequence Send
to blast |
MTNHGGEGLY DELWKLCAGP LVDVPQAGER VYYFPQGHME QLEASTQQDL NTRKPLFLLP 60 PKILCNVMNV RLQAEKDTDE VYAQITLIPV GTKVDEPMSP DPSPPETQKP KVHSFSKVLT 120 ASDTSTHGGF SVLRKHATEC LPPLDMTQQT PTQELVAEDV HGYQWKFKHI FRGQPRRHLL 180 TTGWSTFVTS KRLVAGDTFV FLRGENGELR VGVRRANRQQ SSMPSSVISS HSMHLGVLAT 240 ACHATQAKTM FIVYYKPRTS QFIISLNKYL EAMNNKFSVG MRFKMRFEGE DSPERRYSGT 300 VIGVKDCSPH WKDSKWRCLE VHWDEPASIP RPDKVSPWEI EPFATSESVP QSVMLMKKRP 360 RQASEVSALG ITASNLWQSH EFAQSCLTSQ RSSSQQCYRD STEDAKKSDW LNNSYSVSNL 420 SKDSTLNDQM VSPVEQKKPE TTANYRLFGI DLMSSSLAAS EEKTAPMRPI NITKSTPDSN 480 SDPKSEISKV SEEKKQEPPQ TSPKEVQSKQ ISSTRSRTKV QMQGVPVGRA VDLTALNGYN 540 ELIDDLEKLF DIKGELQSRN QWEIVFTDDE GDMMLVGDDP WPEFCNMVKR IFIWSKEEVK 600 KMTPGNQLRM MLTEVETTIS KSDNHSN*
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Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF082176 | 0.0 | AF082176.1 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds. |