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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa12g028200.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
C2H2 |
Protein Properties |
Length: 339aa MW: 38719.1 Da PI: 8.977 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa12g028200.1 | genome | CSGP | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 181 | 200 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
+ C++C+k+F+r n++ H+
Csa12g028200.1 181 FACSICSKTFNRYNNMQMHM 200
78*****************9 PP
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2 | zf-C2H2 | 10.9 | 0.0014 | 266 | 288 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++Cgk k + ++H +++
Csa12g028200.1 266 FSCGKCGKALAVKGDWRTHEKNC 288
89*****************9987 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MNPYEKGLSF GSPSFIEWLK PPSSPSVLYC MKTRDAISRS NHHQSQMNML ERSLFLYQPQ 60 EPLNTSIQCL PLLNNLMENK SRQRQALDDI KEESKDDVVT LQIGFPNYHR GNSSAEDDSD 120 TTSDHQKKPI KRERIDNGVV LMKMRRKMKY DEKVIDSDME VCGKRFWIPS PAQIHVGPMQ 180 FACSICSKTF NRYNNMQMHM WGHGSEFRKG ADSLKGTTQP AAILRLPCYC CAEGCKNNIN 240 HPRSKPLKDF RTLQTHYKRK HGSKPFSCGK CGKALAVKGD WRTHEKNCGK LWYCTCGSDF 300 KHKRSLKDHI RSFGSGHAPH PSLSFDGFEE DTECVTTE*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF254448 | 0.0 | AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds. |
GenBank | AK118851 | 0.0 | AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22. |
GenBank | AY090918 | 0.0 | AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds. |