PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g028020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 329aa MW: 35686.1 Da PI: 7.3879 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 64.1 | 3.3e-20 | 139 | 197 | 1 | 60 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirr 60 k+fqrl+se+De++lLqG++df++++g +p++d daf+++vkk i+f+++ksq+v+K++r Csa12g028020.1 139 KMFQRLFSETDEVALLQGVLDFTSTKG-DPYEDSDAFCSYVKKLIDFDATKSQIVTKLQR 197 58*************************.9****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.5E-14 | 141 | 197 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MAPKKAELID NLPVVSSSEE EESGSSGDES DSSAEVSRKD VSSSKKPESD SEGESESESD 60 SEPEPAKKPP VVAAKAKSDA SGSAAALPES SKSKRPLKEA EPEANKKLKI SETEHHVVKT 120 VKSNDNESSK KISKEDAKKM FQRLFSETDE VALLQGVLDF TSTKGDPYED SDAFCSYVKK 180 LIDFDATKSQ IVTKLQRKIW GSNGVMTSKS RKKIGGTTPV AATKDMKLVA HSTPKKPQEG 240 NRPEKTEGKG GLSIGREIAL FFNAENSGSC CLDESTITAV WKKVADGAKK TQVEEKWKKL 300 KAKQVELCLQ RTELVNETAK MIFKAYES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g028020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433671.1 | 0.0 | PREDICTED: GLABROUS1 enhancer-binding protein-like | ||||
Swissprot | Q9SB42 | 1e-114 | STKLS_ARATH; GLABROUS1 enhancer-binding protein-like | ||||
TrEMBL | R0F5W3 | 1e-145 | R0F5W3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010433671.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9272 | 17 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 1e-112 | DNA-binding storekeeper protein-related transcriptional regulator |