PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g028020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 329aa    MW: 35686.1 Da    PI: 7.3879
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g028020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57364.13.3e-20139197160
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirr 60 
                     k+fqrl+se+De++lLqG++df++++g +p++d daf+++vkk i+f+++ksq+v+K++r
  Csa12g028020.1 139 KMFQRLFSETDEVALLQGVLDFTSTKG-DPYEDSDAFCSYVKKLIDFDATKSQIVTKLQR 197
                     58*************************.9****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.5E-14141197IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAPKKAELID NLPVVSSSEE EESGSSGDES DSSAEVSRKD VSSSKKPESD SEGESESESD  60
SEPEPAKKPP VVAAKAKSDA SGSAAALPES SKSKRPLKEA EPEANKKLKI SETEHHVVKT  120
VKSNDNESSK KISKEDAKKM FQRLFSETDE VALLQGVLDF TSTKGDPYED SDAFCSYVKK  180
LIDFDATKSQ IVTKLQRKIW GSNGVMTSKS RKKIGGTTPV AATKDMKLVA HSTPKKPQEG  240
NRPEKTEGKG GLSIGREIAL FFNAENSGSC CLDESTITAV WKKVADGAKK TQVEEKWKKL  300
KAKQVELCLQ RTELVNETAK MIFKAYES*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g028020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010433671.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB421e-114STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLR0F5W31e-145R0F5W3_9BRAS; Uncharacterized protein
STRINGXP_010433671.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-112DNA-binding storekeeper protein-related transcriptional regulator