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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g027820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 186aa MW: 21068.4 Da PI: 9.5124 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.4e-12 | 25 | 76 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r h+e+E++RR ++ s ++ Lr+ lP + ++K s ++ + Av+YI +Lq Csa12g027820.1 25 RILHKEVEKQRRLEMASLYASLRSRLPLEF--IQGKRSTSDQVNGAVNYIEYLQ 76 778*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.566 | 23 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-12 | 23 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.2E-9 | 25 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.43E-6 | 25 | 80 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-9 | 25 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0037 | 29 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MNDLPEKRGR PSKKLRVSSD QNMERILHKE VEKQRRLEMA SLYASLRSRL PLEFIQGKRS 60 TSDQVNGAVN YIEYLQRNIK DMSSKRDDLI LLYGRSIGSS NEQSWNEISN HVVIRPCLVG 120 VEIVFSILQT PFSSVLKVLR ERGLCVLGCI SSNVNDRLIH TLQAEVNDMA LIDLADLKVA 180 LTLMK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g027820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY142621 | 1e-164 | AY142621.1 Arabidopsis thaliana unknown protein (At4g25400) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010448440.1 | 1e-133 | PREDICTED: transcription factor bHLH118 | ||||
Swissprot | Q9STJ7 | 6e-95 | BH118_ARATH; Transcription factor bHLH118 | ||||
TrEMBL | A0A1J3IUJ1 | 2e-98 | A0A1J3IUJ1_NOCCA; Uncharacterized protein | ||||
STRING | XP_010448440.1 | 1e-132 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4479 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25400.1 | 2e-97 | bHLH family protein |