PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g027720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 434aa    MW: 47063.3 Da    PI: 7.7241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g027720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08111133326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++lC+f+   G C+yGd+C++ H+
  Csa12g027720.1 111 EKLCKFWVD-GNCPYGDKCRYLHC 133
                     579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.852955IPR000571Zinc finger, CCCH-type
SMARTSM003560.0853154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-6108132IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6110134IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-6111133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-7112130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.8E-40131425IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.2E-5139178IPR001680WD40 repeat
SuperFamilySSF509782.56E-40142427IPR017986WD40-repeat-containing domain
PfamPF004001.9E-4142178IPR001680WD40 repeat
PROSITE profilePS5008213.115146187IPR001680WD40 repeat
PROSITE profilePS5029412.947146345IPR017986WD40-repeat-containing domain
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SMARTSM003201.6218255IPR001680WD40 repeat
SMARTSM00320160262296IPR001680WD40 repeat
SMARTSM003201.9E-4299336IPR001680WD40 repeat
PfamPF004000.0028301335IPR001680WD40 repeat
SMARTSM0032014340383IPR001680WD40 repeat
SMARTSM003202.8386423IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDLDMNGGNK RVFHRLGGGG GNSNRPKTDS NQKVCFHWRA GRCNRYPCPY LHRELPGPGP  60
VATSSSSTNK RVADESGFAG PSHRRGPGFS GSANKTWERF GGNRRTVTKT EKLCKFWVDG  120
NCPYGDKCRY LHCWSKGDGF SLLTQLDGHQ KVVTGIALPS GSDKLYTASK DETVRIWDCA  180
SGQCTGLLNL GGEVGCMISE GPWLLLGMPN LVKAWNIQSN ADLSLTGPVG QVYSLVVGTD  240
LLFAGTQDGS ILVWKYNSTT SCFDPAASLK GHTLAVVSLY VGANRLYSGA MDNVWSLDNL  300
QCIQTLTEHT SVVMSLICWD QFLLSCSLDN TVKIWAATEG GNLEVTYTHK EEYGVLALCG  360
VHDAEAKPVL LCSCNDNSLH LYDLPSFTER GKILAKQEIR SIQIGPGGIF FTGDGSGQVK  420
VWKWSTEPTV ILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-181194265323Tako8
6g6n_A1e-181194265323Tako8
6g6n_B1e-181194265323Tako8
6g6n_C1e-181194265323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g027720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448432.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLR0GZR90.0R0GZR9_9BRAS; Uncharacterized protein
STRINGXP_010448431.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1