PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g026550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 688aa    MW: 77728.5 Da    PI: 9.7489
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g026550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00067091223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    kC++C++ F ++ n++rH r+H
  Csa12g026550.1 70 KCEKCNMEFCSPVNYRRHHRMH 91
                    7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.2016996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MLICSLNSME LVKQDGNDSL DMLIRRAVGK DPFLSFPRPE NTPVQLFQLL HNLERPGWPL  60
LAPLKIQMQK CEKCNMEFCS PVNYRRHHRM HRRQRKHEKD SGKERDALGA FWNKLSPIDA  120
KEILSLKSMM LEDVPGVSVE SGLMSLIEKP GYTALPQYYL RAGSGILDIL QARRSSFPVS  180
SQELFSILDD ASEKTFLCNE AAPMQKYIFD GENGKNVLEP KNVVACASFL LEQRLIKAWL  240
ADKDAEALRC QNLLVEEEEA ARRRQAELLE RKKRKKLRQK EQREKDQKKD AKEDESTTSE  300
EQQYPAESSS QLPVASDSEA QRPDSIPIDA SSSLEDPQVL ETNDGRNGEC QAPMVDDDGF  360
GNGQNMERQN GRRSNGFHAN HAPKLGGMRK NGINRDTRVN TAKVWSRKSV NPKSISQHAA  420
VTQLDQTRNG ELRIGAFSFT IPKSGHSGEH NQTKCSEEDR RTKTVEVKPT TEQATVKIWR  480
PVSSQGRKVS AVHENADKGD KNSNPTAPEV KTTHHHISVQ FNNHKAKEFL AKSKTSFDLM  540
ERGNLWRTRD IGSVSGNRHL GQQHSRILKW CYNRKTKAED ETRKGNEVHE NADKGDKNSN  600
PTAPEVKTTH HHISVQFNNH KAKEFLAKRW KEATSGEHVT LVLSQETDIS GSNTHESSNG  660
VITARPKPRM KPEKGTKVKY VPKQRIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261275RRRQAELLERKKRKK
2269276ERKKRKKL
3271275KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g026550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0812940.0AY081294.1 Arabidopsis thaliana unknown protein (At4g25610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010448406.10.0PREDICTED: uncharacterized protein LOC104730867 isoform X1
RefseqXP_010448407.10.0PREDICTED: uncharacterized protein LOC104730867 isoform X2
TrEMBLR0GHK90.0R0GHK9_9BRAS; Uncharacterized protein
STRINGXP_010448407.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.20.0C2H2-like zinc finger protein