![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa12g025380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 222aa MW: 25669.5 Da PI: 8.6404 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.4 | 4.9e-08 | 99 | 123 | 4 | 26 |
---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 4 elCrffartG..tCkyGdrCkFaHg 26 e C+ ++r G C++Gd+C FaHg Csa12g025380.1 99 EVCPEYSRQGggDCSRGDQCGFAHG 123 78**********************9 PP | |||||||
2 | zf-CCCH | 24.4 | 4.9e-08 | 174 | 198 | 4 | 26 |
---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 4 elCrffartG..tCkyGdrCkFaHg 26 e C+ ++r G C++Gd+C FaHg Csa12g025380.1 174 EVCPEYSRQGggDCSRGDQCGFAHG 198 78**********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14608 | 3.6 | 76 | 82 | No hit | No description |
SMART | SM00356 | 0.0037 | 95 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-5 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-4 | 99 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.197 | 100 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.5 | 133 | 156 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.17 | 139 | 154 | No hit | No description |
SMART | SM00356 | 0.0037 | 170 | 199 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-5 | 174 | 198 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-4 | 174 | 200 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.197 | 175 | 200 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MDVGHINRPT VDILPRKLLS SAKSPSSVSS PLRDYKDQRD YSYDSDSEDP YAGDHFRMYE 60 FKIRRCTRSR SHDWTDCPFS HPGEKARRRD PRRFHYIGEV CPEYSRQGGG DCSRGDQCGF 120 AHGVFECWLH PSRYRTEACK DGKHCKRKVC FFAHSPRQLR ILXRDPRRFH YIGEVCPEYS 180 RQGGGDCSRG DQCGFAHGVF ECWLHPSRYR TEACKALLSL T* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa12g025380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB011475 | 1e-157 | AB011475.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9L2. | |||
GenBank | AY034916 | 1e-157 | AY034916.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds. | |||
GenBank | AY142542 | 1e-157 | AY142542.1 Arabidopsis thaliana unknown protein (At5g44260) mRNA, complete cds. | |||
GenBank | CP002688 | 1e-157 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010451167.1 | 1e-161 | PREDICTED: zinc finger CCCH domain-containing protein 61-like | ||||
Swissprot | Q9FKW2 | 2e-95 | C3H61_ARATH; Zinc finger CCCH domain-containing protein 61 | ||||
TrEMBL | D7MMK2 | 2e-94 | D7MMK2_ARALL; Zinc finger (CCCH-type) family protein | ||||
STRING | XP_010451167.1 | 1e-161 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2987 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44260.1 | 3e-74 | C3H family protein |