PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g019280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 357aa    MW: 39968.8 Da    PI: 6.4172
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g019280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08124144526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd+C FaHg
  Csa12g019280.1 124 ACPDFRK-GGCKKGDSCEFAHG 144
                     7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-6123146IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-6124144IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.338154178IPR000571Zinc finger, CCCH-type
SMARTSM003561.4154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MMIGETRRTY PTVEIPPWPA SEDFTSADLF SPAMNSPDCS MLEALAALQR YLPSNEMDPD  60
SDPDLLGPDS PIDAYSCDHF RMYDFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYHY  120
SGTACPDFRK GGCKKGDSCE FAHGVFECWL HPARYRTQPC KDGGGCRRRV CFFAHSPDQL  180
RFLPNRSPDR VDSFDVSSPI RARAFQLSIS PGSGSPPMSP RADSESSPMA QSLSRSLGSC  240
SINDVVPSFR NLQFNKVKSF PHNNPLFGFG SPRGSILGPG FQSLPTTPTR PGNLDIWEYG  300
LEEEPVMERV VESGRELREK MREKLHKENC MDRVDTDPDQ SSGDGPDVGW VSDLLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g019280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546020.0AC254602.1 Capsella rubella clone CAP08-D12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447881.10.0PREDICTED: zinc finger CCCH domain-containing protein 49-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLD7MD420.0D7MD42_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010447881.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]