PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g014420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 533aa    MW: 59731 Da    PI: 10.0117
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g014420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-2362156399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +  ++ ++l+++ ++lpk+fa+++g++k+ + +++l++e+g+sW+ k+  ++ sg++++ +GW + +++n+L++gD+++F+l  ++ +++v++++
  Csa12g014420.1  62 SLSVTDSNLSRDKVTLPKDFARRNGLDKRMH-EIVLRNEEGKSWDSKV-KSNISGQVFINGGWTSLCSENKLEVGDSCTFRLLPNTAETPVFQLC 154
                     556789999******************9775.****************.57888899*************************9999999*****9 PP

                     -S CS
              B3  98 rk 99 
                     ++
  Csa12g014420.1 155 SR 156
                     87 PP
2B351.41.9e-16179276199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f+k ++++++l +g   lp +f++++ +++++  +++l d++  +W +kl+++k+s+   ++ ++GWk+F+ an++ +g++++++l++  +++++
  Csa12g014420.1 179 FVKLTLTPSSLHLGKQHLPASFTRKNRLINPG--KIILVDKNRAEWPMKLKVDKRSRLmyIISGNGWKSFCAANEIGAGESLTLELIR-GGKSPL 270
                     8899999*******************999655..7***************998777765444469*********************98.677788 PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     +k+++k
  Csa12g014420.1 271 LKFVSK 276
                     888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2055154IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-2155154IPR015300DNA-binding pseudobarrel domain
CDDcd100176.94E-1960150No hitNo description
PROSITE profilePS5086315.04460156IPR003340B3 DNA binding domain
PfamPF023621.8E-2261156IPR003340B3 DNA binding domain
SMARTSM010195.8E-2661157IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-19176279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-17176274IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-17178266No hitNo description
PfamPF023626.4E-16179276IPR003340B3 DNA binding domain
SMARTSM010192.2E-27179277IPR003340B3 DNA binding domain
PROSITE profilePS5086313.38179277IPR003340B3 DNA binding domain
PROSITE profilePS5096716.762428510IPR002121HRDC domain
SuperFamilySSF478193.05E-11431504IPR010997HRDC-like
Gene3DG3DSA:1.10.150.805.9E-10432506IPR002121HRDC domain
PfamPF005708.1E-12433500IPR002121HRDC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044237Biological Processcellular metabolic process
GO:0005622Cellular Componentintracellular
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MSPTKSHFFQ PLIPGFQNHL NIPVKFFSQH IVGKHEGRKI PSRSEKQVEE NVNTDSDLNC  60
FSLSVTDSNL SRDKVTLPKD FARRNGLDKR MHEIVLRNEE GKSWDSKVKS NISGQVFING  120
GWTSLCSENK LEVGDSCTFR LLPNTAETPV FQLCSRIMSE RRIQSAEGCI DSKTGGNRFV  180
KLTLTPSSLH LGKQHLPASF TRKNRLINPG KIILVDKNRA EWPMKLKVDK RSRLMYIISG  240
NGWKSFCAAN EIGAGESLTL ELIRGGKSPL LKFVSKTEQP PVEAEVREHK RARVQRWSQE  300
TQPNVEMREK AAEELGEPSR ASHKSSGNQE NLQHTQACSV SNQVAKVKQS VVDALTSVKR  360
FMAELETTEQ KLAISLQEID NLERGEDNGN KTSSSSKPGE TSVKGPPTSE KRFTLPVLPT  420
EYGPPKVLNL SNNIFIALRK LRSDLVKEAP DGVMGYHIFM NSMIHQISRQ IPRTKEELLG  480
INGLGEDKVR EYGDRVLETI ESRVKEYYGT NKKDSIISNE SPGSRKSMMM SK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g014420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010451094.10.0PREDICTED: B3 domain-containing protein REM8-like
SwissprotQ8H2D11e-146REM8_ARATH; B3 domain-containing protein REM8
TrEMBLD7MB410.0D7MB41_ARALL; Uncharacterized protein
STRINGXP_010451094.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-149B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]