PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g014010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 777aa MW: 85495.7 Da PI: 7.6137 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.9 | 1.8e-18 | 289 | 388 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ Csa12g014010.1 289 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRTD-PEGK 381 99**************************555566778***************9989999999***9.********************654.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ Csa12g014010.1 382 LVMGYRK 388 8777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-29 | 284 | 393 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.76E-20 | 286 | 389 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.13E-22 | 287 | 388 | No hit | No description |
Pfam | PF02362 | 1.1E-15 | 289 | 388 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.068 | 289 | 390 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-20 | 289 | 389 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.8 | 518 | 568 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 3.8E-13 | 523 | 565 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 777 aa Download sequence Send to blast |
MESTKVCMNA LCGAVSTSGE WKKGWPMRSG ELASLCDKCG SAYEQSIFCQ VFHAEESGWR 60 ECTSCDKRLH CGCIASRFMM ELLDNGSVTC ISCAKKSALF SMNVSQESNG RDLSSFASPE 120 HVGSVLERTN LKHLLHFQRI GSTQSSLQMK QEESLLPSRL DALRHKTERK ELQELSAQPN 180 LSISLGPTLM SSPFHDAVVD DRSKATSIFQ LAPRSRQLLP KPANSAPTAA GMEPNGSLVS 240 QIHVARPPPE GRGKTQLLPR YWPRITDQEL QQLSGQYPHL SNSKIIPLFE KVLSASDAGR 300 IGRLVLPKAC AEAYFPPISQ PEGLPLKIQD IKGKEWVFQF RFWPNNNSRM YVLEGVTPCI 360 QSMQLQAGDT VTFSRTDPEG KLVMGYRKAT NSTATQMFKG SNEPNLNMFS NNLNPGCGDI 420 NWSKLEKTED MGKDNLFLQS SLTSARKRVR NIGTKSKRLL IDSVDVLELK VTWDEAQELL 480 RPPQSAKPSI VTLEDQDFEE YDEPPVFGKK TVFVSRQTGE QEQWVQCDAC GKWRRLPVDT 540 LLPPKWLCSD NLLDPARSSC SAPDELSPRE QDTLVRQSKE FKRRRLASSN QAQEASGVET 600 LANAGITTTG EQGEIAVAAT TKHPRHRAGC SCIVCSQPPS GKGKHKPTCT CTVCEAVKRR 660 FRTLMMRKRS RGEAGQASQQ AQSESRDETE VESIPAVEAA AGENIDLNSD PGASRVSMMS 720 LLQAAAFPLE AYLKQKAVSN TAGEQQSSDM VSTEHGSCSA AQEQDKDTNG AHEPVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-67 | 263 | 396 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 581 | 585 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g014010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB206554 | 0.0 | AB206554.1 Arabidopsis thaliana HSI2-L1 mRNA for transcription factor B3-EAR motif family, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010447451.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Refseq | XP_010447452.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | R0F3W5 | 0.0 | R0F3W5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010447451.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7203 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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