PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g009230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 424aa    MW: 48123.6 Da    PI: 5.0175
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g009230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.9e-1839129199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffk++   ++++s+ +v+p ++ ++   +   +k+++l+ + grsW+v    + +++++ + +GW +Fv++n L++gDf++F ++g++ f   v+
  Csa12g009230.1  39 FFKAF--VSHFSSDSMVIPIPYYDQL--PRLLPKKVILQGPGGRSWNVAT--KIRGDEVHFVQGWPKFVEDNTLNDGDFLTFVYNGNHIF--EVS 125
                     78888..88999999*******9766..4558899***************..88888888899**********************99999..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     +fr+
  Csa12g009230.1 126 IFRS 129
                     9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100176.46E-1637128No hitNo description
Gene3DG3DSA:2.40.330.107.5E-2237132IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-2437132IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.74837130IPR003340B3 DNA binding domain
SMARTSM010192.5E-1939130IPR003340B3 DNA binding domain
PfamPF023629.4E-1639129IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-5324409IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.71329421IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
SLSFSLSLFL VFLSLLKHRS NISSSSMATA TEFQFPPRFF KAFVSHFSSD SMVIPIPYYD  60
QLPRLLPKKV ILQGPGGRSW NVATKIRGDE VHFVQGWPKF VEDNTLNDGD FLTFVYNGNH  120
IFEVSIFRSD GCKETSEVFE VSEDEGDSVC SLSSDDTDTR SEPEMENPIP EGRDKGKSKV  180
DVVEDSDEEE DSVYSESSED TETESDSGSE FKIGKTTPKR KNKGKKKDQE AVPVEEESSE  240
EDGDGDSDGD SDSDSDYVEA FGQLDVEDKS NSDDGSYAPE EEDTAASTTC VKAKVPNLKR  300
KEAAKKRKKV EPKIKNPERY LDDPKNIHFE TNVKNRLYEL LVHAQLVKDY CLRFGDYVDY  360
IDRFGKLRAK TAKWKDQRVC IKRWMRICKR HGLKKEDRVL CELLRRGSFV YAIKLHIVRG  420
KNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-16251321104At1g16640
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219227RKNKGKKKD
2304308KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g009230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010447091.10.0PREDICTED: B3 domain-containing protein At4g34400-like
SwissprotQ9SZ051e-167Y3440_ARATH; B3 domain-containing protein At4g34400
TrEMBLR0F8940.0R0F894_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010447089.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.11e-148B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Richter R, et al.
    Floral regulators FLC and SOC1 directly regulate expression of the B3-type transcription factor TARGET OF FLC AND SVP 1 at the Arabidopsis shoot apex via antagonistic chromatin modifications.
    PLoS Genet., 2019. 15(4): p. e1008065
    [PMID:30946745]