PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa12g006310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 296aa MW: 32665.8 Da PI: 9.3706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa12g006310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.9	4.8e-05	38	80	7	53
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + E+ RRd++++ f eL l ++ +K +K++ L+ +++ +k+ Csa12g006310.1 38 QSEKLRRDKLKEQFLELGNALDPN----RPKSDKVSLLTDTIQMLKD 80 57*****************997....79**********99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.985	31	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-4	37	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-11	37	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-9	39	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDQSKKPKAC SESESSVSSS SSSTSGHNLR KQFVLVKQSE KLRRDKLKEQ FLELGNALDP 60 NRPKSDKVSL LTDTIQMLKD VMSQVERLKA EYATLSQESH ELIQEKTELR EEKATLKSDI 120 EILNAQYQHR VRSMVPWRPH YAYPIPVVAI TQGQSTFIPY SASVVNPRIE QASVQKRSSS 180 SGASSKQDYK SKSLDQGNDH KYDVGLELEL KVHAPSLAQQ VSDKSSMALP TSSFCVVVVT 240 IYISHRLIKV TSMQDVSGKE KKESLTPTAN SSNSYSSSQA VQDSSPGGVN DILKA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa12g006310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF502888	3e-46	EF502888.1 Arabidopsis lyrata subsp. lyrata isolate 08 At4g36060-like protein gene, partial cds.
GenBank	EF502889	3e-46	EF502889.1 Arabidopsis lyrata subsp. lyrata isolate 10 At4g36060-like protein gene, partial cds.
GenBank	EF502890	3e-46	EF502890.1 Arabidopsis lyrata subsp. lyrata isolate 11 At4g36060-like protein gene, partial cds.
GenBank	EF502891	3e-46	EF502891.1 Arabidopsis lyrata subsp. lyrata isolate 34 At4g36060-like protein gene, partial cds.
GenBank	EF502892	3e-46	EF502892.1 Arabidopsis lyrata subsp. lyrata isolate 49 At4g36060-like protein gene, partial cds.
GenBank	EF502893	3e-46	EF502893.1 Arabidopsis lyrata subsp. lyrata isolate 53 At4g36060-like protein gene, partial cds.
GenBank	EF502894	3e-46	EF502894.1 Arabidopsis lyrata subsp. lyrata isolate 57 At4g36060-like protein gene, partial cds.
GenBank	EF502895	3e-46	EF502895.1 Arabidopsis lyrata subsp. lyrata isolate 59 At4g36060-like protein gene, partial cds.
GenBank	EF502896	3e-46	EF502896.1 Arabidopsis lyrata subsp. petraea isolate 06 At4g36060-like protein gene, partial cds.
GenBank	EF502897	3e-46	EF502897.1 Arabidopsis lyrata subsp. petraea isolate 18 At4g36060-like protein gene, partial cds.
GenBank	EF502898	3e-46	EF502898.1 Arabidopsis lyrata subsp. petraea isolate 24 At4g36060-like protein gene, partial cds.
GenBank	EF502899	3e-46	EF502899.1 Arabidopsis lyrata subsp. petraea isolate 45 At4g36060-like protein gene, partial cds.
GenBank	EF502900	3e-46	EF502900.1 Arabidopsis lyrata subsp. petraea isolate 59 At4g36060-like protein gene, partial cds.
GenBank	EF502901	3e-46	EF502901.1 Arabidopsis lyrata subsp. petraea isolate 11 At4g36060-like protein gene, partial cds.
GenBank	EF502902	3e-46	EF502902.1 Arabidopsis lyrata subsp. petraea isolate 13 At4g36060-like protein gene, partial cds.
GenBank	EF502903	3e-46	EF502903.1 Arabidopsis lyrata subsp. petraea isolate 15 At4g36060-like protein gene, partial cds.
GenBank	EF502904	3e-46	EF502904.1 Arabidopsis lyrata subsp. petraea isolate 18 At4g36060-like protein gene, partial cds.
GenBank	EF502905	3e-46	EF502905.1 Arabidopsis lyrata subsp. petraea isolate 35 At4g36060-like protein gene, partial cds.
GenBank	EF502906	3e-46	EF502906.1 Arabidopsis lyrata subsp. petraea isolate 37 At4g36060-like protein gene, partial cds.
GenBank	EF502907	3e-46	EF502907.1 Arabidopsis lyrata subsp. petraea isolate 41 At4g36060-like protein gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010446832.1	1e-131	PREDICTED: transcription factor bHLH11-like
Swissprot	Q8W2F2	1e-112	BH011_ARATH; Transcription factor bHLH11
TrEMBL	R0H1A0	1e-121	R0H1A0_9BRAS; Uncharacterized protein
STRING	XP_010446832.1	1e-130	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2353	27	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36060.1	8e-94	bHLH family protein

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786] Tanabe N, et al. The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana. J. Plant Res., 2019. 132(1): p. 93-105 [PMID:30417276]