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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g003650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bZIP | ||||||||
Protein Properties | Length: 245aa MW: 28126.4 Da PI: 7.1832 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.2 | 2.7e-11 | 141 | 192 | 5 | 56 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 ++ +r+++NRe+A+rsR RK+ i++L++ v L+ eN++L ++l + Csa12g003650.1 141 RKRKRMESNRESAKRSRMRKQSHIDNLRNQVNRLDLENRELGNRLRLVLHQL 192 6789*************************************98877655555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.2E-10 | 134 | 194 | No hit | No description |
SMART | SM00338 | 1.1E-13 | 137 | 201 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.841 | 139 | 202 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.8E-10 | 141 | 192 | No hit | No description |
Pfam | PF00170 | 3.4E-9 | 141 | 186 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 4.30E-18 | 142 | 193 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 144 | 159 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MLSTVPAFSF SEPGLVNQFS GFQTGFTPWE WDCSDLFFSV DQMSLEPAVP SPCYGESDTG 60 SVRINSGSHY MKTGSDESCL GFVKTSPGFD DANQSDGLPC SQAHEPDSED PKKLTAITNS 120 GSGEQNHNGK FLTQPEMTEE RKRKRMESNR ESAKRSRMRK QSHIDNLRNQ VNRLDLENRE 180 LGNRLRLVLH QLQRVNTDNN RLVTEQEILR LRLSEMRRVL IIRQLQQQQQ WELHNRRMIM 240 TEHK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 158 | KRSRMR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g003650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493725 | 0.0 | AB493725.1 Arabidopsis thaliana At4g37730 gene for hypothetical protein, partial cds, clone: RAAt4g37730. | |||
GenBank | AL035709 | 0.0 | AL035709.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T28I19 (ESSA project). | |||
GenBank | AL161592 | 0.0 | AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010446630.2 | 0.0 | PREDICTED: light-inducible protein CPRF3 | ||||
TrEMBL | A0A178UR91 | 1e-141 | A0A178UR91_ARATH; BZIP7 | ||||
TrEMBL | Q9T062 | 1e-141 | Q9T062_ARATH; BZIP transcription factor-like protein | ||||
STRING | XP_010446630.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7855 | 18 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37730.1 | 1e-112 | basic leucine-zipper 7 |