PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa12g001990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 603aa    MW: 67207 Da    PI: 4.3861
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa12g001990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-08443484144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      r rW++++ el++++++++G++  + I + ++ +Rt++q k+++
   Csa12g001990.1 443 RTRWSKQDTELFYEGIREFGSN-LSMIQHLFP-NRTREQMKLKF 484
                      78******************99.*********.******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159635.5E-23436520No hitNo description
SuperFamilySSF466898.22E-9437491IPR009057Homeodomain-like
PROSITE profilePS512939.697441492IPR017884SANT domain
SMARTSM007173.0E-7442490IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-4443484IPR009057Homeodomain-like
CDDcd001672.18E-5445485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MDLDFDDHPS HHAAPAVRAG TRFKPKGRPQ PKKKQVSLST SHTTLPTNVA KETLSTQSQE  60
DSVSLNESSA IPNEALPSES NVPESGTINQ STIETLSEEN VNVVSREVHW STGASVLRAC  120
NHVDIGGKRS DDSIEAAASA FPDDPRTQDS TIFRDFVTPE TGEDEGHLDM ETLDIIQEEG  180
TTSSYVQHTG KLQPKPRVLD TVVEEEPEPH YSVDGTGYFS MGTNESEVMD NVESRNDFST  240
YGHLQEEEPN IPEAPRETVP ETEAQNASGR SDNYIGTGEE ESCLGNNNTL EQEQSVRGKK  300
KGKSKRAAGR KRKNTSEEAP SEKTEKKFKH SSRRQKRTLE KELLETPDDE IRSLPIRDML  360
RLVEYKEWLE KKEAKGAVVP PIQESDMNAS GNASGNASGS QYYSQGFDAE DEFGMEDSEN  420
QEAYVVKPDS PVNYQTYMYK TARTRWSKQD TELFYEGIRE FGSNLSMIQH LFPNRTREQM  480
KLKFKLEERR YPLKLNEALA TRPKQLIHFP NVIKKLQEEA AAAKAAEEGE EGGEEVGAET  540
EETNDVPQNE EPEKPEETER ASDAVDGVKE SDGGDGLRSD GGDECDNDEG DDDFWNSYKS  600
DM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298312KKKGKSKRAAGRKRK
2309335RKRKNTSEEAPSEKTEKKFKHSSRRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa12g001990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446432.10.0PREDICTED: transcription factor TFIIIB component B'' homolog
TrEMBLR0GHJ60.0R0GHJ6_9BRAS; Uncharacterized protein
STRINGXP_010446432.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.10.0MYB_related family protein