PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa11g104690.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 409aa MW: 44619.6 Da PI: 8.2263

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g104690.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.9e-06	363	385	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ff r C+ G++C + H+ Csa11g104690.1 363 KPCMFFNRPKGCRLGESCLYLHD 385 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.568	359	387	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.16E-5	362	388	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MFLTEDCPAK VSSSNLLPPG FETTVFPSTR NNNIPRIKWK RPPKFIISDA LLVGSGGDST 60 ETLSENLRIS KVLEAFYPHR SVIPTRPSVS PAVAEAHYDD STTPSIPLAF IEDEPQPPLQ 120 SSHDFNAVSL LGPQLSLAAS AALSSLTKEQ GSQVDAHLLV KLLSDPIIVH NLLNGKPLDT 180 ANHVTTLNTD IAMDSNPPPL HNVPVSVQSC ATDPPLPKPT LPISTALSIK PTLVVHSYPL 240 SSGIKPLPRL EDSYTAAAPL KPPSPVDNAL VSEQNKQPLN MSSTWDMNRV PESAQTETAP 300 QNRNGNTNRD DQVSSAEPVK NVDYYKSLIR EHGVVSPATN ENNNYKGRVD DNMKVVKVNK 360 IQKPCMFFNR PKGCRLGESC LYLHDRSKRS WTDVAPHFPR AKRLKFGS*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MFLTEDCPAK VSSSNLLPPG FETTVFPSTR NNNIPRIKWK RPPKFIISDA LLVGSGGDST  60
ETLSENLRIS KVLEAFYPHR SVIPTRPSVS PAVAEAHYDD STTPSIPLAF IEDEPQPPLQ  120
SSHDFNAVSL LGPQLSLAAS AALSSLTKEQ GSQVDAHLLV KLLSDPIIVH NLLNGKPLDT  180
ANHVTTLNTD IAMDSNPPPL HNVPVSVQSC ATDPPLPKPT LPISTALSIK PTLVVHSYPL  240
SSGIKPLPRL EDSYTAAAPL KPPSPVDNAL VSEQNKQPLN MSSTWDMNRV PESAQTETAP  300
QNRNGNTNRD DQVSSAEPVK NVDYYKSLIR EHGVVSPATN ENNNYKGRVD DNMKVVKVNK  360
IQKPCMFFNR PKGCRLGESC LYLHDRSKRS WTDVAPHFPR AKRLKFGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g104690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010446300.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 68-like
Swissprot	Q9FH61	1e-179	C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBL	D7MMZ4	0.0	D7MMZ4_ARALL; Zinc finger (CCCH-type) family protein
STRING	XP_010446300.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12