PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa11g104190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 1278aa    MW: 141440 Da    PI: 4.8121
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa11g104190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS327.82.1e-1002125312330
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +++++cA+ +s++d ++a++ L +++e +s+ gdp++R+ +yf+eAL++rl+           +++ts++++++ + ++k++++++P+ kf+hl
  Csa11g104190.1 212 LKAIYDCAR-ISDSDPNEASKSLVQIRESVSELGDPTERVGFYFAEALSNRLSP----D----YSTTTSSSEEEDLIISYKTLNDACPYSKFAHL 297
                     578899**9.8999***************************************9....2....2333334568999******************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+e ++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++fef + +   ++ 
  Csa11g104190.1 298 TANQAILEATEDSNKIHIVDFGIVQGIQWPALLQALATRSSGKPtQIRVSGIPAPSLGesPEPSLIATGNRLRDFAKVLDLNFEFVP-ILAPIHL 391
                     ****************************************77776**********99998999************************.6999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++rv+p+EalaVn++lql++ll+e+ ++ +   + L+l ksl+P+vv++ e e+++n+  F++r+ +a+++ysa+f+sle +l+r+seer+
  Csa11g104190.1 392 LNGSSFRVDPDEALAVNFMLQLYKLLEETPTIVD---TALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNAIQFYSAVFESLEPNLGRHSEERV 483
                     **************************99999988...********************************************************** PP

            GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvpls 330
                      vEr+l+gr+i+ ++  e++  +rer+e++e+Wr  +e+aGF++v+l+
  Csa11g104190.1 484 RVERVLFGRRISGLIGPEKTGiHRERMEEKEQWRVLMENAGFESVKLN 531
                     ******************99989**********************997 PP
2GRAS334.61.7e-1025879192342
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +++++cA+ +s++d ++a++ L +++e +s+ gdp++R+ +yf+eAL++rl+          +ps+t+++++++ + ++k++++++P+ kf+hl
  Csa11g104190.1 587 LKAIYNCAR-ISDSDPNEASKSLVQIRESVSELGDPTERVGFYFAEALSNRLSP-------DYSPSPTTSSSTEDLILSYKTLNDACPYSKFAHL 673
                     578899**9.8999***************************************9.......567777777889********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     taNqaIlea+e ++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++fef + +   ++ 
  Csa11g104190.1 674 TANQAILEATEDSNKIHIVDFGIVQGIQWPALLQALATRSSGKPtQIRVSGIPAPSLGesPEPSLIATGNRLRDFAKVLDLNFEFVP-ILAPIHL 767
                     ****************************************77776**********99998999************************.6999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l+ +++rv+p+EalaVn++lql++ll+e+ ++ +   + L+l ksl+P+vv++ e e+++n+  F++r+ +a+++ysa+f+sle +l+r+seer+
  Csa11g104190.1 768 LNGSSFRVDPDEALAVNFMLQLYKLLEETPTIVD---TALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNAIQFYSAVFESLEPNLGRHSEERV 859
                     **************************99999988...********************************************************** PP

            GRAS 284 kvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                      vEr+l+gr+i+ ++  e++  +rer+e++e+Wr  +e+aGF++v+l+++ ++  k+l++
  Csa11g104190.1 860 RVERVLFGRRISGLIGPEKTGiHRERMEEKEQWRVLMENAGFESVKLNSDPNEASKSLVQ 919
                     ******************99989****************************999999986 PP
3GRAS2861e-87908118315298
            GRAS   15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleave 107 
                      +d ++a++ L +++e +s+ gdp++R+ +yf+eAL++rl+          +ps+t+++++++ + ++k++++++P+ kf+hltaNqaIlea+e
  Csa11g104190.1  908 SDPNEASKSLVQIRESVSELGDPTERVGFYFAEALSNRLSP-------DYSPSPTTSSSTEDLILSYKTLNDACPYSKFAHLTANQAILEATE 993 
                      57789***********************************9.......567777777889********************************* PP

            GRAS  108 geervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 
                       ++++Hi+Df+i qG+QWpaLlqaLa+R++g+p ++R+ g+ +p+ g   + +l +tg+rL++fA+ l+++fef + +   ++ l+ +++rv+
  Csa11g104190.1  994 DSNKIHIVDFGIVQGIQWPALLQALATRSSGKPtQIRVSGIPAPSLGesPEPSLIATGNRLRDFAKVLDLNFEFVP-ILAPIHLLNGSSFRVD 1085
                      *****************************77776**********99998999************************.6999************ PP

            GRAS  198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 
                      p+EalaVn++lql++ll+e+ ++ +   + L+l ksl+P+vv++ e e+++n+  F++r+ +a+++ysa+f+sle +l+r+seer+ vEr+l+
  Csa11g104190.1 1086 PDEALAVNFMLQLYKLLEETPTIVD---TALRLAKSLNPRVVTLGEYEVSLNRVGFANRVKNAIQFYSAVFESLEPNLGRHSEERVRVERVLF 1175
                      *****************99999988...***************************************************************** PP

            GRAS  291 greivnvv 298 
                      gr+i++ v
  Csa11g104190.1 1176 GRRISERV 1183
                      ****8765 PP
4GRAS79.46.2e-2511811277281374
            GRAS  281 erikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsv 370 
                      er+ vEr+l+gr+i+ ++  e++  +rer+e++e+Wr  +e+aGF++v+ls++a++qak ll +++ s  y++ e++  +v l W+d pL+++
  Csa11g104190.1 1181 ERVRVERVLFGRRISGLIGPEKTGiHRERMEEKEQWRVLMENAGFESVKLSNYAVSQAKILLWNYNySSLYSIVESKPGFVsLAWNDLPLLTL 1273
                      8999*****************99989****************************************9999*******99999*********** PP

            GRAS  371 SaWr 374 
                      S+Wr
  Csa11g104190.1 1274 SSWR 1277
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.967185555IPR005202Transcription factor GRAS
PfamPF035147.3E-98212531IPR005202Transcription factor GRAS
PROSITE profilePS5098557.493560931IPR005202Transcription factor GRAS
PfamPF035146.0E-100587919IPR005202Transcription factor GRAS
PROSITE profilePS5098552.119281255IPR005202Transcription factor GRAS
PfamPF035142.1E-2211811277IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 1278 aa     Download sequence    Send to blast
MAYMCTTDSG NLMAIAQQVI KQKQQQEQQQ QQHHHHQDHQ LFGINPLSLN PWPNNTSLGF  60
GLSGSAFPDP FQVTAGGDSN DPAFPFPSLD HHHATTTGGG FRLSDFGGGS DGAEFESDEW  120
METLITGGDS VAATATDYAI YGPDPFATYP SRLSSDLNNR VIDTSSPLPP PTLWPPSSPL  180
SIPPHETTTT TTTATEDLET NDSDFDLEPP LLKAIYDCAR ISDSDPNEAS KSLVQIRESV  240
SELGDPTERV GFYFAEALSN RLSPDYSTTT SSSEEEDLII SYKTLNDACP YSKFAHLTAN  300
QAILEATEDS NKIHIVDFGI VQGIQWPALL QALATRSSGK PTQIRVSGIP APSLGESPEP  360
SLIATGNRLR DFAKVLDLNF EFVPILAPIH LLNGSSFRVD PDEALAVNFM LQLYKLLEET  420
PTIVDTALRL AKSLNPRVVT LGEYEVSLNR VGFANRVKNA IQFYSAVFES LEPNLGRHSE  480
ERVRVERVLF GRRISGLIGP EKTGIHRERM EEKEQWRVLM ENAGFESVKL NLNNRVIDTS  540
SPLPPPTLWP PSSPLSIPPH ETTTTTTTAT EDLETNDSDF DLEPPLLKAI YNCARISDSD  600
PNEASKSLVQ IRESVSELGD PTERVGFYFA EALSNRLSPD YSPSPTTSSS TEDLILSYKT  660
LNDACPYSKF AHLTANQAIL EATEDSNKIH IVDFGIVQGI QWPALLQALA TRSSGKPTQI  720
RVSGIPAPSL GESPEPSLIA TGNRLRDFAK VLDLNFEFVP ILAPIHLLNG SSFRVDPDEA  780
LAVNFMLQLY KLLEETPTIV DTALRLAKSL NPRVVTLGEY EVSLNRVGFA NRVKNAIQFY  840
SAVFESLEPN LGRHSEERVR VERVLFGRRI SGLIGPEKTG IHRERMEEKE QWRVLMENAG  900
FESVKLNSDP NEASKSLVQI RESVSELGDP TERVGFYFAE ALSNRLSPDY SPSPTTSSST  960
EDLILSYKTL NDACPYSKFA HLTANQAILE ATEDSNKIHI VDFGIVQGIQ WPALLQALAT  1020
RSSGKPTQIR VSGIPAPSLG ESPEPSLIAT GNRLRDFAKV LDLNFEFVPI LAPIHLLNGS  1080
SFRVDPDEAL AVNFMLQLYK LLEETPTIVD TALRLAKSLN PRVVTLGEYE VSLNRVGFAN  1140
RVKNAIQFYS AVFESLEPNL GRHSEERVRV ERVLFGRRIS ERVRVERVLF GRRISGLIGP  1200
EKTGIHRERM EEKEQWRVLM ENAGFESVKL SNYAVSQAKI LLWNYNYSSL YSIVESKPGF  1260
VSLAWNDLPL LTLSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-13721012773375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa11g104190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0107000.0AB010700.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21.
GenBankAY0625380.0AY062538.1 Arabidopsis thaliana SCARECROW gene regulator (At5g66770; MUD21.1) mRNA, complete cds.
GenBankBT0025800.0BT002580.1 Arabidopsis thaliana SCARECROW gene regulator (At5g66770) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019087701.10.0PREDICTED: scarecrow-like protein 4, partial
SwissprotQ9FL030.0SCL4_ARATH; Scarecrow-like protein 4
TrEMBLA0A178US250.0A0A178US25_ARATH; Uncharacterized protein
STRINGXP_010444732.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47862752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]